{"id":"W3102829296","doi":"10.1094/phyto-08-20-0330-le","title":"Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic<i>Fusarium</i>that Includes the<i>Fusarium solani</i>Species Complex","year":2020,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":213,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agricultural Research Service; Oak Ridge Institute for Science and Education; Biotechnology and Biological Sciences Research Council; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Monophyly; Polyphyly; Fusarium; Fusarium solani; Taxonomy (biology); Clade; Genus; Evolutionary biology; Botany; Phylogenetics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002178376,0.0003295237,0.0006327872,0.0001240962,0.0001788337,0.00003594067,0.0007047519,0.0001597596,0.00006749485],"category_scores_gemma":[0.0001674435,0.0002699617,0.000345183,0.0004259303,0.000424132,0.000007014681,0.0005623386,0.0001512382,0.00002611749],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001233786,"about_ca_system_score_gemma":0.00008225155,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004175065,"about_ca_topic_score_gemma":0.00006065033,"domain_scores_codex":[0.9979564,0.0002605841,0.0004350838,0.0007032615,0.0001979824,0.0004466955],"domain_scores_gemma":[0.998589,0.00006975917,0.0002735321,0.0007753676,0.00008119934,0.0002111493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003287626,0.0001055109,0.01960388,0.00003672857,0.0004749322,0.00006791489,0.0001750466,0.0003049798,0.9712002,0.00009088314,0.007542278,0.00006884742],"study_design_scores_gemma":[0.001207593,0.0007776456,0.3618201,0.000006385289,0.002481792,0.0001091208,0.0003611566,0.001281555,0.4387555,0.0001312171,0.1921888,0.0008791288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9226766,0.004776226,0.00153375,0.001153594,0.0001394724,0.0003573464,0.06877441,0.00003346874,0.0005551166],"genre_scores_gemma":[0.9751811,0.0007556396,0.0005126848,0.004138816,0.0002864579,0.00003733832,0.0190159,0.00002890325,0.00004314501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5324447,"threshold_uncertainty_score":0.9999753,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05368227029415205,"score_gpt":0.260767326360799,"score_spread":0.207085056066647,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}