{"id":"W3102829296","doi":"10.1094/phyto-08-20-0330-le","title":"Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic<i>Fusarium</i>that Includes the<i>Fusarium solani</i>Species Complex","year":2020,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":213,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agricultural Research Service; Oak Ridge Institute for Science and Education; Biotechnology and Biological Sciences Research Council; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Monophyly; Polyphyly; Fusarium; Fusarium solani; Taxonomy (biology); Clade; Genus; Evolutionary biology; Botany; Phylogenetics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001384048,0.001073907,0.001424491,0.003406261,0.00274298,0.00167506,0.0007908658,0.001154166,0.003879708],"category_scores_gemma":[0.003189306,0.0004620891,0.002012186,0.005037005,0.000821243,0.001214306,0.001804022,0.002620823,0.0042338],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009080721,"about_ca_system_score_gemma":0.002251358,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00436412,"about_ca_topic_score_gemma":0.01008963,"domain_scores_codex":[0.998929,0.000154615,0.0001141783,0.0004035777,0.0001907265,0.0002078312],"domain_scores_gemma":[0.9983451,0.000660776,0.0002692233,0.0001916415,0.0003175185,0.0002157359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003636678,0.001169769,0.2794516,0.005472102,0.001573416,0.004836837,0.005520866,0.01056576,0.5213058,0.005467782,0.06369531,0.097304],"study_design_scores_gemma":[0.0002598439,0.0005325624,0.710609,0.001085369,0.001354876,0.003220296,0.004557627,0.02357914,0.02566622,0.005398166,0.2234715,0.0002654983],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6520898,0.003258253,0.009166362,0.001441787,0.0002913441,0.0001701971,0.3240409,0.001716022,0.007825367],"genre_scores_gemma":[0.3775506,0.001369758,0.03056609,0.000739817,0.00005639128,0.0003040979,0.5873192,0.0007178861,0.001376097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00436412,"threshold_uncertainty_score":0.01297885,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05368227029415205,"score_gpt":0.260767326360799,"score_spread":0.207085056066647,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}