{"id":"W3103817688","doi":"10.1101/2020.11.17.20232827","title":"Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 transmission identifies community social distancing as the dominant intervention reducing outbreaks","year":2020,"lang":"en","type":"preprint","venue":"medRxiv","topic":"COVID-19 epidemiological studies","field":"Mathematics","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Thomas Hospital","funders":"Warwick Medical School; Menzies Centre for Australian Studies, King's College London, University of London; University Hospitals Coventry and Warwickshire NHS Trust; Cambridge University Hospitals; University of Brighton; Imperial College London; Directorate for Biological Sciences; University of Warwick; University of Cambridge; London School of Hygiene and Tropical Medicine; King's College London; University of Portsmouth","keywords":"Epidemiology; Psychological intervention; Outbreak; Medicine; Transmission (telecommunications); Social distance; Pandemic; Infection control; Health care; Intervention (counseling); Disease; Intensive care medicine; Virology; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Internal medicine; Nursing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004983185,0.0003303325,0.0002974235,0.001139054,0.0002848333,0.0005795117,0.0002035609,0.0002831784,0.001868033],"category_scores_gemma":[0.0013288,0.0001550365,0.0003821997,0.0007615376,0.0002580601,0.000259967,0.0005957675,0.0002773968,0.0003595249],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002672577,"about_ca_system_score_gemma":0.000391728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003234246,"about_ca_topic_score_gemma":0.005365713,"domain_scores_codex":[0.9995377,0.0001570377,0.00003824045,0.000110395,0.00007176434,0.00008492225],"domain_scores_gemma":[0.9990819,0.0002031806,0.0003177256,0.00007550502,0.0001676394,0.0001540332],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003437743,0.00007305213,0.9677939,0.00006074513,0.00008937893,0.0001503297,0.0002687116,0.0002240154,0.02295579,0.00004727692,0.0001167436,0.007876261],"study_design_scores_gemma":[0.000007058647,0.0002227752,0.9951485,0.00001275887,0.00003556787,0.0002625001,0.0005185039,0.0009665967,0.002486999,0.00007109386,0.0002624884,0.000005170169],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986091,0.0001003679,0.0006052363,0.00003590699,0.000002930695,0.00001461937,0.0002435408,0.000008560584,0.0003798046],"genre_scores_gemma":[0.9984736,0.00004556393,0.0009335281,0.00001726215,0.000004205971,0.00001106607,0.000314837,0.000003238378,0.0001967256],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003234246,"threshold_uncertainty_score":0.006430805,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2656463846221919,"score_gpt":0.4414139752652644,"score_spread":0.1757675906430726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}