{"id":"W3104834427","doi":"10.1007/s00248-020-01643-1","title":"A Generalist Lifestyle Allows Rare Gardnerella spp. to Persist at Low Levels in the Vaginal Microbiome","year":2020,"lang":"en","type":"article","venue":"Microbial Ecology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Generalist and specialist species; Microbiome; Dysbiosis; Metagenomics; Gardnerella vaginalis; Microbiology; Bacterial vaginosis; Genetics; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002095959,0.0003023328,0.0004734189,0.0004367995,0.0007833115,0.00143238,0.0002371416,0.0006613274,0.00519006],"category_scores_gemma":[0.0006115944,0.000173208,0.0002587973,0.0003158362,0.0004471268,0.0005998031,0.0009231766,0.0006081527,0.001202194],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002584594,"about_ca_system_score_gemma":0.0004215839,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00180755,"about_ca_topic_score_gemma":0.003665218,"domain_scores_codex":[0.9996893,0.00003389164,0.00001323594,0.0000937817,0.0000667204,0.0001030889],"domain_scores_gemma":[0.9995547,0.00005188638,0.00009732651,0.00004361403,0.00009386874,0.000158497],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002482487,0.0001075869,0.03912089,0.0003554485,0.00004898661,0.0006823818,0.0006058516,0.0001260101,0.9252636,0.00110622,0.001049737,0.03128501],"study_design_scores_gemma":[0.00005784937,0.002152048,0.6016974,0.0003915407,0.0001644981,0.01015974,0.007862505,0.001566045,0.2659587,0.006272476,0.1035719,0.0001452657],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9811813,0.002560431,0.00325971,0.0009713777,0.00009455076,0.00003755898,0.0005562492,0.0001334583,0.01120548],"genre_scores_gemma":[0.9904628,0.001053455,0.003750227,0.0004021026,0.0000597406,0.00001734619,0.0004818106,0.00003422073,0.003738251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00519006,"threshold_uncertainty_score":0.01736253,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0306908504032708,"score_gpt":0.2739333076352328,"score_spread":0.243242457231962,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}