{"id":"W3104834427","doi":"10.1007/s00248-020-01643-1","title":"A Generalist Lifestyle Allows Rare Gardnerella spp. to Persist at Low Levels in the Vaginal Microbiome","year":2020,"lang":"en","type":"article","venue":"Microbial Ecology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Generalist and specialist species; Microbiome; Dysbiosis; Metagenomics; Gardnerella vaginalis; Microbiology; Bacterial vaginosis; Genetics; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006328002,0.0003318073,0.0004923833,0.0002597819,0.0004411841,0.00005156749,0.0008457365,0.0003981588,0.005045392],"category_scores_gemma":[0.0003799532,0.000279538,0.0001891185,0.0006788099,0.0006205539,0.00008206222,0.0004596484,0.0008289848,0.01243771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003545258,"about_ca_system_score_gemma":0.0002354458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003291713,"about_ca_topic_score_gemma":0.001599365,"domain_scores_codex":[0.9965859,0.001022357,0.0004691494,0.0009311582,0.00005641475,0.0009349973],"domain_scores_gemma":[0.9988604,0.0002444795,0.00009736061,0.0005679643,0.0001455831,0.00008421174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002726607,0.0002803448,0.008468106,0.00002822269,0.0001047249,0.00008728355,0.002573833,0.0001232918,0.8599008,0.00007559375,0.1279269,0.000158135],"study_design_scores_gemma":[0.002907038,0.001039067,0.09093562,0.00001958335,0.00005394327,0.001496855,0.0007779473,0.000004424037,0.2047262,0.00001527437,0.6974081,0.0006159485],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9739203,0.0002886904,0.00004244643,0.02243833,0.0008691291,0.0009659921,0.0001995325,0.00006987806,0.001205659],"genre_scores_gemma":[0.9869636,0.00001863092,0.0001532137,0.007894659,0.0002730671,0.000100124,0.0001922525,0.00004078526,0.004363616],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6551746,"threshold_uncertainty_score":0.9999657,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0306908504032708,"score_gpt":0.2739333076352328,"score_spread":0.243242457231962,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}