{"id":"W3105038790","doi":"10.1038/s42003-020-01377-3","title":"Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm","year":2020,"lang":"en","type":"article","venue":"Communications Biology","topic":"Helminth infection and control","field":"Veterinary","cited_by":167,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; McGill University","funders":"Biotechnology and Biological Sciences Research Council; Wellcome; Directorate for Biological Sciences; Research Councils UK; Wellcome Trust; McGill University","keywords":"Biology; Haemonchus contortus; Caenorhabditis elegans; Genetics; Genomics; Genome; Chromosome; Sequence assembly; Gene; Transcriptome; Nematode; Computational biology; Bacterial artificial chromosome; Evolutionary biology; Ecology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001700338,0.0001039672,0.0001986537,0.0000360351,0.0001708201,0.00001400081,0.0004557937,0.00005831512,0.00003384567],"category_scores_gemma":[0.00009741618,0.00008247675,0.00006061335,0.00009905714,0.0002603339,0.00005095834,0.0001373753,0.0001851708,0.000020194],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002420064,"about_ca_system_score_gemma":0.00006407693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001160572,"about_ca_topic_score_gemma":0.0001373341,"domain_scores_codex":[0.9991345,0.000232345,0.0003144963,0.000152717,0.00003225669,0.0001337224],"domain_scores_gemma":[0.9988925,0.0002158714,0.0001332735,0.00061814,0.00008083288,0.00005931545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002408872,0.0001279936,0.01715772,0.00002568785,0.00006409398,8.047322e-7,0.002566999,0.00007865343,0.9474034,0.02503065,0.0002242491,0.007078834],"study_design_scores_gemma":[0.002357459,0.001412012,0.1459372,0.0000492414,0.0001710715,0.0004045632,0.0005037329,0.8355931,0.000592618,0.002417535,0.01019823,0.0003632506],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9284773,0.001197441,0.0496785,0.01645097,0.0000495223,0.000427282,0.00009233241,0.0001022153,0.003524363],"genre_scores_gemma":[0.9945712,0.0001582849,0.004268085,0.000834448,0.00003373452,0.00006933622,0.00003577013,0.00001036354,0.00001876157],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9468108,"threshold_uncertainty_score":0.3363304,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09857305904967008,"score_gpt":0.3194735667650713,"score_spread":0.2209005077154012,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}