{"id":"W3106677156","doi":"10.1186/s40168-021-01138-2","title":"Disease-induced changes in plant microbiome assembly and functional adaptation","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":463,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Chinese Academy of Sciences; Institute of Microbiology, Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Biology; Microbiome; Rhizosphere; Metagenomics; Microbial ecology; Pepper; Botany; Plant disease; Colonization; Host (biology); Ecology; Amplicon sequencing; Bacteria; 16S ribosomal RNA; Biotechnology; Horticulture; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003627503,0.0004031007,0.0003586373,0.0004547267,0.0003394184,0.0006033111,0.000165162,0.0004730692,0.001114163],"category_scores_gemma":[0.0003288096,0.0001514602,0.0003974881,0.0003539132,0.0002878947,0.0004817308,0.0005451158,0.0006451258,0.0002056163],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004652479,"about_ca_system_score_gemma":0.0002843631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001143574,"about_ca_topic_score_gemma":0.001095502,"domain_scores_codex":[0.9996538,0.00003567415,0.00002033877,0.0001386157,0.00004910742,0.0001024119],"domain_scores_gemma":[0.9997118,0.00002908028,0.0001014531,0.00002411066,0.00005568188,0.0000779007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001886781,0.00006622566,0.04464566,0.0001346037,0.00005749727,0.0001350678,0.0001990412,0.0002646161,0.9478325,0.0001111918,0.0002125877,0.006152189],"study_design_scores_gemma":[0.000009519285,0.0002507963,0.9386915,0.00001920936,0.00004635873,0.0003786344,0.0003538235,0.002138467,0.0549656,0.0002624633,0.002857952,0.0000256762],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965041,0.0009758077,0.001104069,0.00007117346,0.00001638575,0.00001721262,0.0007286787,0.00004785748,0.000534798],"genre_scores_gemma":[0.9975527,0.0002290915,0.0007314374,0.00009789664,0.000005781586,0.00002123078,0.0009109711,0.00001071306,0.0004402625],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001143574,"threshold_uncertainty_score":0.003727257,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03801876702152276,"score_gpt":0.2162330519190647,"score_spread":0.178214284897542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}