{"id":"W3106677156","doi":"10.1186/s40168-021-01138-2","title":"Disease-induced changes in plant microbiome assembly and functional adaptation","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":463,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Chinese Academy of Sciences; Institute of Microbiology, Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Biology; Microbiome; Rhizosphere; Metagenomics; Microbial ecology; Pepper; Botany; Plant disease; Colonization; Host (biology); Ecology; Amplicon sequencing; Bacteria; 16S ribosomal RNA; Biotechnology; Horticulture; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009483455,0.0001210205,0.0001278751,0.00003970942,0.000144429,0.00008819799,0.00006800847,0.00006573569,0.0003541805],"category_scores_gemma":[0.00001882757,0.00005986638,0.00003890068,0.0003241394,0.00002427175,0.0001263585,0.00007252613,0.0001178154,0.00004853769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004382931,"about_ca_system_score_gemma":0.00001914762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003928552,"about_ca_topic_score_gemma":0.006044891,"domain_scores_codex":[0.9992596,0.00007197707,0.0001460424,0.0002579773,0.00005307138,0.0002113692],"domain_scores_gemma":[0.9996899,0.0000876113,0.00004953804,0.00004925315,0.00005289744,0.00007080788],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003443976,0.0001071661,0.0007571728,0.000007106345,0.00000895272,0.00002970048,0.00005023203,0.000001005873,0.9928084,0.00001805088,0.0007732263,0.005404522],"study_design_scores_gemma":[0.000416289,0.00009978766,0.6142758,0.0001284131,0.00001858117,0.0003426727,0.0008205284,0.0001175665,0.3023227,0.00005840937,0.08100976,0.0003894664],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966545,0.0003300689,0.000003054557,0.002067611,0.0002329122,0.00008370165,0.0005186102,0.00002907159,0.00008044973],"genre_scores_gemma":[0.9974376,0.00009004169,0.00005272777,0.0003603569,0.00008309049,0.000009234201,0.001426153,0.000001129118,0.0005396996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6904857,"threshold_uncertainty_score":0.3878028,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03801876702152276,"score_gpt":0.2162330519190647,"score_spread":0.178214284897542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}