{"id":"W3107089682","doi":"10.3390/microorganisms8121883","title":"Proteomic 2D-DIGE Analysis of Milk Whey from Dairy Cows with Staphylococcus aureus Mastitis Reveals Overexpression of Host Defense Proteins","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Scheme for Promotion of Academic and Research Collaboration; Hospital for Sick Children","keywords":"Mastitis; Staphylococcus aureus; Proteome; Biology; Microbiology; Lactoferrin; Innate immune system; Somatic cell count; Immune system; Immunology; Food science; Bacteria; Biochemistry; Lactation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001750533,0.0002622567,0.0006769053,0.00003604683,0.0001271417,0.00003479728,0.0004951704,0.0001750967,0.00243897],"category_scores_gemma":[0.0001000606,0.0001168615,0.0002081768,0.0009650905,0.0001757922,0.0001233979,0.0001992507,0.000180624,0.00002048082],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000251331,"about_ca_system_score_gemma":0.00003135064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002151056,"about_ca_topic_score_gemma":0.0008828203,"domain_scores_codex":[0.9980253,0.0001945611,0.0005678891,0.0005367927,0.0003742758,0.0003011984],"domain_scores_gemma":[0.9989395,0.00009727347,0.0004393675,0.0001940484,0.0001505338,0.0001792686],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000241039,0.0001262303,0.0136708,0.00005370813,0.0002456327,0.00000895209,0.0008194878,0.00002424298,0.9831665,0.00008482808,0.0008128998,0.0007456355],"study_design_scores_gemma":[0.0004507161,0.000745467,0.148601,0.0001904598,0.0002995365,8.64067e-7,0.0004017851,0.00002779611,0.8470041,0.0001928501,0.00176881,0.0003166749],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950679,0.0001771967,0.0002882337,0.0005584315,0.00003088167,0.0008031991,0.002797207,0.00005950732,0.0002174686],"genre_scores_gemma":[0.9963192,0.00003761518,0.002678753,0.0003650189,0.0001124209,0.00002819751,0.0003617735,0.00000426149,0.00009272427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1361625,"threshold_uncertainty_score":0.9984729,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01908770642074641,"score_gpt":0.2112839978245134,"score_spread":0.192196291403767,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}