{"id":"W3107315402","doi":"10.3390/pathogens9120984","title":"Co-Circulation of Two Independent Clades and Persistence of CHIKV-ECSA Genotype during Epidemic Waves in Rio de Janeiro, Southeast Brazil","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; European Commission; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; International Development Research Centre","keywords":"Chikungunya; Clade; Arbovirus; Biology; Phylogenetic tree; Virus; Genotype; Virology; Geography; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003328796,0.0002288913,0.0002990233,0.0008815167,0.0005427545,0.0006326757,0.000252244,0.0002741976,0.0004675633],"category_scores_gemma":[0.001095895,0.0002011169,0.0003767325,0.0005494433,0.0003747476,0.0003238314,0.0005004086,0.0003780449,0.000106809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004910135,"about_ca_system_score_gemma":0.0005372976,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02093157,"about_ca_topic_score_gemma":0.0335045,"domain_scores_codex":[0.9997303,0.00005117402,0.00002377209,0.00009210095,0.00003860549,0.00006407413],"domain_scores_gemma":[0.999545,0.00009275991,0.000156725,0.00004580957,0.00009541053,0.0000642161],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002554227,0.00006366243,0.9329979,0.0001081472,0.0001455331,0.0009663478,0.004250552,0.0003578378,0.04937751,0.0004843291,0.0002930547,0.01069963],"study_design_scores_gemma":[0.00001392158,0.0000909744,0.9906535,0.00006635067,0.00008927812,0.001293192,0.00261433,0.001143194,0.0017448,0.0002110467,0.002058052,0.0000214791],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986112,0.0002888023,0.0002682625,0.00005860579,0.000003900592,0.00001404471,0.0002079526,0.000006367004,0.0005408496],"genre_scores_gemma":[0.9990882,0.0001465267,0.000340968,0.00002371675,0.000002120708,0.00000680956,0.00030897,0.000003496,0.00007918412],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02093157,"threshold_uncertainty_score":0.04161948,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02254167280250283,"score_gpt":0.2782278809571344,"score_spread":0.2556862081546315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}