{"id":"W3107315402","doi":"10.3390/pathogens9120984","title":"Co-Circulation of Two Independent Clades and Persistence of CHIKV-ECSA Genotype during Epidemic Waves in Rio de Janeiro, Southeast Brazil","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; European Commission; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; International Development Research Centre","keywords":"Chikungunya; Clade; Arbovirus; Biology; Phylogenetic tree; Virus; Genotype; Virology; Geography; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001438217,0.0001029507,0.0003097593,0.00006114099,0.00002806294,0.000004550792,0.0000567241,0.00005368738,0.0000566371],"category_scores_gemma":[0.0001524971,0.00009677964,0.00009423474,0.0001058858,0.00005599886,0.00003227919,0.00002230962,0.0001068555,0.000003133141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002934392,"about_ca_system_score_gemma":0.00007502388,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007097936,"about_ca_topic_score_gemma":0.00002865096,"domain_scores_codex":[0.9990691,0.00006057859,0.0003009831,0.0002170866,0.0001744415,0.0001777925],"domain_scores_gemma":[0.9994926,0.0000391096,0.0001243883,0.0001461177,0.00004542921,0.000152299],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002248795,0.00004465205,0.5644591,0.0002568305,0.00002951749,0.00002364876,0.001751522,0.0002203126,0.4317053,0.00007718024,0.000001400819,0.001205674],"study_design_scores_gemma":[0.00185296,0.00008642673,0.9842451,0.0001149743,0.0001409521,0.0000237213,0.001203324,0.007026457,0.005148435,0.00006052621,0.00001016707,0.00008701577],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972514,0.001552505,0.0001497397,0.0003041619,0.00001376841,0.0002350576,0.00006959063,0.00001208121,0.0004117166],"genre_scores_gemma":[0.999522,0.00007128515,0.0001554137,0.0001321164,0.00007325183,0.000006583117,0.00001458539,0.00001303051,0.00001167914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4265569,"threshold_uncertainty_score":0.3946559,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02254167280250283,"score_gpt":0.2782278809571344,"score_spread":0.2556862081546315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}