{"id":"W3107490924","doi":"10.1093/jas/skaa278.032","title":"29 Conditional GWAS using sequence-based genotypes for susceptibility to Mycobacterium avium subsp paratuberculosis infection in Canadian Holstein","year":2020,"lang":"en","type":"article","venue":"Journal of Animal Science","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; University of Guelph; Agriculture and Agri-Food Canada","funders":"","keywords":"Paratuberculosis; Heritability; Biology; Mycobacterium avium subspecies paratuberculosis; Quantitative trait locus; Feces; Genome-wide association study; Breed; SNP; Linkage disequilibrium; Genotype; Herd; Genetics; Veterinary medicine; Genetic association; Animal science; Mycobacterium; Single-nucleotide polymorphism; Microbiology; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001419867,0.0007691042,0.0005390754,0.0009429128,0.001684697,0.0006907363,0.001043295,0.0004995958,0.003776588],"category_scores_gemma":[0.001633673,0.0002375293,0.0008687488,0.001417297,0.0006102409,0.0001689858,0.0005558864,0.0006603018,0.0001995274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003281394,"about_ca_system_score_gemma":0.003898293,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6698292,"about_ca_topic_score_gemma":0.7862366,"domain_scores_codex":[0.9986338,0.0001778847,0.00006362095,0.0005264902,0.0002988711,0.0002993149],"domain_scores_gemma":[0.9990514,0.000267816,0.0002034462,0.0001400255,0.0001837522,0.0001535603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001651208,0.0001350312,0.9518189,0.00008950441,0.001281348,0.0009888258,0.0006132824,0.001305382,0.02479529,0.0007106593,0.002165955,0.01444467],"study_design_scores_gemma":[0.00002505136,0.00008534249,0.9957018,0.00001435777,0.0002805675,0.0001554418,0.0001332974,0.001623351,0.0005376686,0.0000645019,0.001364928,0.00001356049],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928814,0.0002884533,0.002036967,0.0001047832,0.00001561957,0.00003244565,0.003602932,0.00008189282,0.0009555218],"genre_scores_gemma":[0.9954803,0.00007462915,0.001780585,0.00006110399,0.000005754579,0.00002787592,0.00156137,0.00003697259,0.0009714836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3301708,"threshold_uncertainty_score":0.6642303,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09248838456564543,"score_gpt":0.3702425059724103,"score_spread":0.2777541214067649,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}