{"id":"W3107829568","doi":"10.1101/2020.11.26.398933","title":"An unexpected donor in the adaptive introgression candidate <i>Helianthus annuus</i> subsp. <i>texanus</i>","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Sunflower and Safflower Cultivation","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; University of Victoria","funders":"Genome British Columbia; Division of Environmental Biology; Genome Canada; National Science Foundation","keywords":"Introgression; Biology; Helianthus annuus; Evolutionary biology; Helianthus; Botany; Genetics; Sunflower; Gene; Horticulture","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006439048,0.0006280608,0.0005688995,0.00006494872,0.0003170435,0.0004095064,0.001324944,0.0005482571,0.00008947594],"category_scores_gemma":[0.0001405448,0.0002688219,0.0001829855,0.001384761,0.0001320532,0.000328022,0.0003016632,0.001075188,0.00005066611],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001552474,"about_ca_system_score_gemma":0.0001156019,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000824955,"about_ca_topic_score_gemma":0.000312562,"domain_scores_codex":[0.9962791,0.0005959579,0.0006132698,0.001264299,0.0005963895,0.0006509334],"domain_scores_gemma":[0.9983699,0.0001621051,0.0003739384,0.0004897094,0.0003134802,0.0002908189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001719498,0.0002938981,0.01240916,0.00003060292,0.00003778783,0.0001058154,0.0001281188,0.00004159911,0.9858588,0.0001041049,0.0007609904,0.00005718092],"study_design_scores_gemma":[0.0007443177,0.0005119937,0.8656069,0.0003976499,0.00009834747,7.612777e-8,0.0001575982,0.00165755,0.1200722,0.00001582528,0.009286129,0.001451425],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945835,0.000579279,0.0000781476,0.002222862,0.0006816481,0.0009912065,0.0004839366,0.0003605074,0.00001892916],"genre_scores_gemma":[0.996929,0.000172088,0.0003073407,0.001295769,0.001034432,0.0002346312,0.00001281827,0.00001283722,0.00000108648],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8657866,"threshold_uncertainty_score":0.9999764,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01797724397598519,"score_gpt":0.2168762489003773,"score_spread":0.1988990049243922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}