{"id":"W3108129619","doi":"10.3390/plants9121710","title":"Engineered Ripening-Specific Accumulation of Polyamines Spermidine and Spermine in Tomato Fruit Upregulates Clustered C/D Box snoRNA Gene Transcripts in Concert with Ribosomal RNA Biogenesis in the Red Ripe Fruit","year":2020,"lang":"en","type":"article","venue":"Plants","topic":"Polyamine Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Small nucleolar RNA; Spermidine; Biology; Ribosomal RNA; Spermine; Ribosome biogenesis; Gene; RNA; Transcription (linguistics); Genetics; Biochemistry; Non-coding RNA; Ribosome; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001170355,0.0001968133,0.0002899879,0.00009257546,0.0000247424,0.00001766428,0.0002257466,0.0001113258,0.000008571215],"category_scores_gemma":[0.00002613348,0.0001547329,0.00003413278,0.0003046061,0.00006201972,0.00001335322,0.00003817263,0.00007750664,0.00000105084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006991388,"about_ca_system_score_gemma":0.00002539694,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000163551,"about_ca_topic_score_gemma":0.0004166191,"domain_scores_codex":[0.9988276,0.00006186929,0.0003947851,0.0003513948,0.0001324053,0.0002319468],"domain_scores_gemma":[0.9995633,0.00003152233,0.00009179672,0.0002304302,0.00002114271,0.00006175883],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000334154,0.00007271209,0.03481456,0.00002713632,0.00001633447,0.00001404087,0.0006769786,0.0003084695,0.9625897,0.0000182205,0.0000635303,0.001064184],"study_design_scores_gemma":[0.002141649,0.0000983149,0.3694429,0.00003884377,0.00001423468,0.00002729628,0.0001698764,0.001727755,0.625147,0.0000131799,0.0009777833,0.0002011067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957589,0.002716169,0.0001718611,0.0006132327,0.00002705774,0.0004207674,0.0002215742,0.000008622106,0.00006183668],"genre_scores_gemma":[0.9983724,0.0005063517,0.0004220599,0.0001168391,0.0001061234,0.00003938983,0.0004008015,0.00001856391,0.0000174417],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3374426,"threshold_uncertainty_score":0.6309823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04138661440050585,"score_gpt":0.262579592925385,"score_spread":0.2211929785248792,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}