{"id":"W3108251788","doi":"10.1111/jop.13148","title":"Whole‐exome sequencing reveals novel vacuolar ATPase genes’ variants and variants in genes involved in lysosomal biology and autophagosomal formation in oral granular cell tumors","year":2020,"lang":"en","type":"article","venue":"Journal of Oral Pathology and Medicine","topic":"Tumors and Oncological Cases","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill Genome Centre; McGill University","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Biology; Exome sequencing; Gene; Endosome; Exome; Pathology; Cell biology; Mutation; Cell; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001192056,0.0002237445,0.001089461,0.0004105706,0.00004689028,0.000007789216,0.00007333112,0.0002580786,0.00002004035],"category_scores_gemma":[0.0006739687,0.0001554925,0.0000367896,0.0003236836,0.0002765123,0.0002562627,0.00007433582,0.0005827112,6.90424e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007249334,"about_ca_system_score_gemma":0.00009815225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008720033,"about_ca_topic_score_gemma":0.0001026663,"domain_scores_codex":[0.9979866,0.0002641062,0.0009798501,0.0002862431,0.0001444749,0.0003387988],"domain_scores_gemma":[0.9989809,0.0001394612,0.0004111397,0.0000823864,0.00008283811,0.0003032815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009991881,0.0001332138,0.495228,0.0001929746,0.000005107717,0.02030295,0.001149219,0.00001120614,0.4792134,0.0001135116,0.00002546381,0.002625785],"study_design_scores_gemma":[0.01398464,0.004200293,0.9682593,0.0003973439,0.00009308889,0.008686215,0.001134036,0.001120478,0.0009042423,0.0009324589,0.0001261828,0.0001616996],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9865272,0.007252307,0.0003297744,0.005467585,0.0001114544,0.0002644542,0.00001084751,0.000008198899,0.00002817402],"genre_scores_gemma":[0.9941947,0.001089587,0.002186183,0.002326047,0.0001671055,0.000004143684,0.00001292528,0.00001076627,0.000008554985],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4783091,"threshold_uncertainty_score":0.6340799,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05587194418354319,"score_gpt":0.3075781229442422,"score_spread":0.251706178760699,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}