{"id":"W3110191273","doi":"10.1111/pce.13969","title":"Diurnal dynamics of the Arabidopsis rosette proteome and phosphoproteome","year":2020,"lang":"en","type":"article","venue":"Plant Cell & Environment","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Helmholtz Association; FP7 Food, Agriculture and Fisheries, Biotechnology; Forschungszentrum Jülich; European Commission","keywords":"Proteome; Biology; Phosphorylation; Protein phosphorylation; Arabidopsis; Arabidopsis thaliana; Kinase; Cell biology; Circadian rhythm; Circadian clock; Calmodulin; Transcriptome; Protein kinase A; Biochemistry; Gene expression; Gene; Mutant; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009194601,0.0001538206,0.0001269471,0.0003581497,0.0001950282,0.000294141,0.0001206273,0.0001441516,0.0005472521],"category_scores_gemma":[0.0001226051,0.000150923,0.0001254151,0.0001954891,0.00009491173,0.0002601998,0.0001612655,0.0002630507,0.0002233874],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001423246,"about_ca_system_score_gemma":0.0001241171,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007287269,"about_ca_topic_score_gemma":0.001624648,"domain_scores_codex":[0.9999483,0.00000425552,0.000002971877,0.00001766999,0.00001829172,0.00000856355],"domain_scores_gemma":[0.999916,0.00000879813,0.0000216905,0.000009065914,0.00002457991,0.00001986635],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000520648,0.000005182224,0.002368272,0.00002729602,0.000008653237,0.00004002823,0.00003169304,0.00003764204,0.9951012,0.00005766287,0.00008112287,0.002189268],"study_design_scores_gemma":[0.0000107379,0.0001035415,0.7030169,0.00001649032,0.00003958012,0.0009006916,0.000167085,0.001470889,0.2901764,0.0004044367,0.003667083,0.00002618977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904832,0.002252768,0.003755119,0.000123105,0.00002423829,0.00001188801,0.001956745,0.0001022804,0.001290657],"genre_scores_gemma":[0.992054,0.001143609,0.003095568,0.00009681861,0.00001567694,0.00002613822,0.002203142,0.00003386575,0.001331112],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007287269,"threshold_uncertainty_score":0.001830757,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004744607013200338,"score_gpt":0.1565274977652276,"score_spread":0.1517828907520272,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}