{"id":"W3110320917","doi":"10.1038/s41598-020-77170-3","title":"Super resolution microscopy and deep learning identify Zika virus reorganization of the endoplasmic reticulum","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Faculty of Medicine, University of British Columbia; Canadian Institutes of Health Research; Nvidia; University of British Columbia; Compute Canada","keywords":"Endoplasmic reticulum; Zika virus; Viral replication; Cell biology; Organelle; Biology; Matrix (chemical analysis); Virology; Virus; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003939596,0.00009482176,0.0001855756,0.00004441602,0.0002489634,0.00009564459,0.00006206883,0.0000531267,0.0001558233],"category_scores_gemma":[0.0009274376,0.00007006244,0.0000831583,0.0004453879,0.0002077989,0.00008965939,0.00008445471,0.0001307311,0.000009280198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002023978,"about_ca_system_score_gemma":0.000100203,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000247969,"about_ca_topic_score_gemma":0.00001038731,"domain_scores_codex":[0.9985277,0.00006290517,0.0003809285,0.0004645756,0.0003928033,0.0001710831],"domain_scores_gemma":[0.9990051,0.00001750426,0.0002319093,0.0003982036,0.0002129333,0.0001343389],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004948241,0.00003644163,0.08123671,0.00009351312,0.00002057113,0.00006665375,0.0007700152,0.00004384703,0.9148129,0.00005813256,0.002199873,0.0006118853],"study_design_scores_gemma":[0.00116823,0.000192608,0.1463228,0.0002455881,0.0005274956,0.0004764419,0.0009905517,0.0074975,0.7951822,0.0006074132,0.04652091,0.0002683639],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955929,0.001024554,0.0003180142,0.001062741,0.001232533,0.0003636163,0.000001939554,0.00003892172,0.0003647805],"genre_scores_gemma":[0.9986709,0.00002995405,0.00009842095,0.0001657144,0.00007997808,0.000005530655,0.00003358549,0.00001507033,0.000900829],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1196307,"threshold_uncertainty_score":0.2857063,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007438370165683253,"score_gpt":0.2430555431830679,"score_spread":0.2356171730173846,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}