{"id":"W3110323992","doi":"10.1038/s41586-020-2961-x","title":"Multiple wheat genomes reveal global variation in modern breeding","year":2020,"lang":"en","type":"article","venue":"Nature","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":1013,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; University of Guelph; Agriculture and Agri-Food Canada; National Research Council Canada; Global Institute for Water Security; Saskatchewan Research Council (Canada); University of Saskatchewan","funders":"Core Research for Evolutional Science and Technology; Directorate for Biological Sciences; Japan Society for the Promotion of Science; Biotechnology and Biological Sciences Research Council; Alberta Wheat Commission; Eidgenössische Technische Hochschule Zürich; Bundesministerium für Ernährung und Landwirtschaft; German Network for Bioinformatics Infrastructure; King Abdullah University of Science and Technology; National Agriculture and Food Research Organization; Universität Zürich; Bundesministerium für Bildung und Forschung; Ministry of Education, Culture, Sports, Science and Technology; Australian Government; Kansas Wheat Commission; Japan Agency for Medical Research and Development; Western Grains Research Foundation; Saskatchewan Wheat Development Commission; Genome Prairie; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Grains Research and Development Corporation; Agroscope; Genome Canada; National Science Foundation","keywords":"Genome; Biology; Structural variation; Genomics; Plant disease resistance; Plant genetics; Gene; Genetics; Comparative genomics; Biotechnology; Plant breeding; Computational biology; Evolutionary biology; Agronomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000608501,0.00006899454,0.00009300232,0.000002941426,0.00004890907,0.00002266217,0.0001144319,0.0004706496,0.0000449249],"category_scores_gemma":[0.00002798781,0.00002741273,0.00003488357,0.0001992117,0.000008849174,0.00003496161,0.0000364577,0.0003654809,0.000009367803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001312059,"about_ca_system_score_gemma":0.000003729449,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004223856,"about_ca_topic_score_gemma":0.0003754828,"domain_scores_codex":[0.999464,0.00002458254,0.00008956442,0.0001865067,0.00008895322,0.0001464426],"domain_scores_gemma":[0.9998568,0.00002610857,0.00002031836,0.00001780476,0.00002222938,0.00005669815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004418522,0.00002690279,0.1108701,0.000005552326,0.000003707589,0.00001245079,0.0002950518,0.00004519762,0.8017522,0.0002754108,0.001263591,0.08540572],"study_design_scores_gemma":[0.0002995815,0.0002466868,0.9824791,0.000008580791,0.000006159642,0.000007253982,0.00009741392,0.003535758,0.001178184,0.002688446,0.009268855,0.0001839711],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989253,0.001404592,0.000009149491,0.008022814,0.0001243465,0.00007819497,0.00004633595,0.00002475762,0.001036753],"genre_scores_gemma":[0.9972482,0.00004276677,0.0001869999,0.001977085,0.0004775693,0.000002196988,0.00003550374,3.579909e-7,0.00002931273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.871609,"threshold_uncertainty_score":0.3630081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01861738944894231,"score_gpt":0.2259464602953875,"score_spread":0.2073290708464451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}