{"id":"W3110323992","doi":"10.1038/s41586-020-2961-x","title":"Multiple wheat genomes reveal global variation in modern breeding","year":2020,"lang":"en","type":"article","venue":"Nature","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":1013,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; University of Guelph; Agriculture and Agri-Food Canada; National Research Council Canada; Global Institute for Water Security; Saskatchewan Research Council (Canada); University of Saskatchewan","funders":"Core Research for Evolutional Science and Technology; Directorate for Biological Sciences; Japan Society for the Promotion of Science; Biotechnology and Biological Sciences Research Council; Alberta Wheat Commission; Eidgenössische Technische Hochschule Zürich; Bundesministerium für Ernährung und Landwirtschaft; German Network for Bioinformatics Infrastructure; King Abdullah University of Science and Technology; National Agriculture and Food Research Organization; Universität Zürich; Bundesministerium für Bildung und Forschung; Ministry of Education, Culture, Sports, Science and Technology; Australian Government; Kansas Wheat Commission; Japan Agency for Medical Research and Development; Western Grains Research Foundation; Saskatchewan Wheat Development Commission; Genome Prairie; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Grains Research and Development Corporation; Agroscope; Genome Canada; National Science Foundation","keywords":"Genome; Biology; Structural variation; Genomics; Plant disease resistance; Plant genetics; Gene; Genetics; Comparative genomics; Biotechnology; Plant breeding; Computational biology; Evolutionary biology; Agronomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002684708,0.0002319753,0.0002138129,0.0006371238,0.000165807,0.000527343,0.0001860398,0.0003157983,0.0008464649],"category_scores_gemma":[0.0003212782,0.0002115817,0.0002241531,0.0009333689,0.0002600552,0.0003433648,0.0004482553,0.0003640958,0.0001744856],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002478609,"about_ca_system_score_gemma":0.00009233111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004922954,"about_ca_topic_score_gemma":0.001032714,"domain_scores_codex":[0.9998429,0.00001196947,0.000008562778,0.0000943061,0.00002598404,0.00001621201],"domain_scores_gemma":[0.9998056,0.00005128155,0.00006182628,0.00003406894,0.00002360093,0.00002355223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00037787,0.00003245061,0.06673557,0.0002316504,0.0003218296,0.0005241773,0.0007959948,0.001402173,0.8638343,0.002353201,0.0006447001,0.06274614],"study_design_scores_gemma":[0.00002975147,0.0001989327,0.9513854,0.00004092696,0.0002452853,0.0009469782,0.0002694077,0.001497862,0.02128894,0.003366107,0.02070295,0.00002755145],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891,0.002277126,0.004606676,0.0001343118,0.00001864435,0.000008337554,0.001638019,0.0001325058,0.002084309],"genre_scores_gemma":[0.9917417,0.000824607,0.003332227,0.0001622825,0.00002149677,0.000009477708,0.003192903,0.00003149309,0.0006838156],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008464649,"threshold_uncertainty_score":0.002831757,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01861738944894231,"score_gpt":0.2259464602953875,"score_spread":0.2073290708464451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}