{"id":"W3110526712","doi":"10.1080/19490976.2020.1847976","title":"Ulcerative Colitis-associated <i>E. coli</i> pathobionts potentiate colitis in susceptible hosts","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Canada; Agence Nationale de la Recherche; CH.I.L.D. Foundation; BC Children's Hospital","keywords":"Colitis; Ulcerative colitis; Microbiology; Biology; Dysbiosis; Immunology; Inflammation; Bacterial adhesin; Inflammatory bowel disease; Strain (injury); Irritable bowel syndrome; Escherichia coli; Gene; Gut flora; Medicine; Disease; Pathology; Gastroenterology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001709796,0.000246,0.0003080475,0.0000520989,0.0001363871,0.00005204809,0.0002268319,0.0002639407,0.0001150641],"category_scores_gemma":[0.00005853085,0.0002702926,0.0001110535,0.0002400445,0.00008651288,0.000008678271,0.000151568,0.0001922053,0.0001541413],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007021891,"about_ca_system_score_gemma":0.0002143136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005631628,"about_ca_topic_score_gemma":0.004214054,"domain_scores_codex":[0.9982198,0.0001972433,0.000366031,0.0005443307,0.00009316672,0.0005794103],"domain_scores_gemma":[0.9993185,0.00001144342,0.0001227536,0.0002132948,0.000130202,0.0002038192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002148372,0.0001248229,0.003354303,0.00004750524,0.00003465596,0.00002877188,0.0005012554,0.000007784858,0.9630337,0.00005732866,0.03243511,0.0001599546],"study_design_scores_gemma":[0.005688686,0.001554254,0.4412701,0.000217497,0.00004811214,0.0000427523,0.0008665496,0.00004609729,0.3921866,0.0001106746,0.1568768,0.001091981],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960164,0.0004570329,0.00007448224,0.001263261,0.0001623835,0.0004906162,0.0003609212,0.00003563329,0.001139272],"genre_scores_gemma":[0.9921283,0.000532143,0.0002511157,0.005167173,0.0001477681,0.00002522492,0.0007083112,0.00003932436,0.001000662],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5708471,"threshold_uncertainty_score":0.9999749,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01156424490362354,"score_gpt":0.2404607163038925,"score_spread":0.2288964714002689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}