{"id":"W3110683019","doi":"10.1128/jcm.02078-20","title":"Development of a Duplex Real-Time PCR Assay for the Differentiation of Blastomyces dermatitidis and <i>Blastomyces gilchristii</i> and a Retrospective Analysis of Culture and Primary Specimens from Blastomycosis Cases from New York (2005 to 2019)","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"Centers for Disease Control and Prevention; National Science Foundation","keywords":"Blastomyces; Blastomyces dermatitidis; Blastomycosis; Biology; Polymerase chain reaction; Microbiology; Pathology; Medicine; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001239042,0.0004396237,0.0005110866,0.0008890426,0.0002165339,0.0006012388,0.0003753291,0.000646466,0.001229741],"category_scores_gemma":[0.002101739,0.0004220057,0.0003506944,0.0004619175,0.0004237246,0.0003195599,0.0002436386,0.0005872905,0.0005636036],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005309304,"about_ca_system_score_gemma":0.0007670139,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001714595,"about_ca_topic_score_gemma":0.003406298,"domain_scores_codex":[0.998091,0.0003236996,0.0001992763,0.0006306089,0.0006163417,0.0001389852],"domain_scores_gemma":[0.9988974,0.000393989,0.0002141658,0.00008278053,0.0003284889,0.00008300378],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004317575,0.0002146089,0.03662141,0.0001822771,0.00003228056,0.0002757914,0.0002973211,0.0004747474,0.9397447,0.0002945139,0.0003908491,0.02103979],"study_design_scores_gemma":[0.0001321313,0.002733279,0.1205573,0.00007637122,0.0001803905,0.003286953,0.0003695516,0.01062907,0.8471038,0.0002294407,0.01461853,0.00008323749],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8837192,0.001771615,0.1054541,0.0002332307,0.0002136587,0.001281752,0.002736958,0.0006055355,0.003983906],"genre_scores_gemma":[0.7873173,0.0009014612,0.1988619,0.0003775642,0.00006028578,0.001711112,0.005049959,0.00006099246,0.005659466],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001714595,"threshold_uncertainty_score":0.006552756,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03848303083509502,"score_gpt":0.3114969615910289,"score_spread":0.2730139307559338,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}