{"id":"W3111301571","doi":"10.1186/s12864-020-07321-3","title":"Genome-wide association analysis reveals genetic variations and candidate genes associated with salt tolerance related traits in Gossypium hirsutum","year":2021,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Research in Cotton Cultivation","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Shandong Academy of Agricultural Sciences; Natural Science Foundation of Jiangsu Province; Government of Jiangsu Province","keywords":"Biology; Candidate gene; Quantitative trait locus; Genome-wide association study; Genetics; Single-nucleotide polymorphism; Gossypium; Cultivar; Gene; Marker-assisted selection; Horticulture; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000639991,0.0001443301,0.0002985161,0.00005247797,0.0001920448,0.0001526453,0.0001438638,0.000163275,0.00009868853],"category_scores_gemma":[0.000855878,0.0000766999,0.00007115332,0.00179972,0.00002548596,0.000127563,0.00005679189,0.0001584639,0.000007465472],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000442038,"about_ca_system_score_gemma":0.00008085789,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003091157,"about_ca_topic_score_gemma":0.02553142,"domain_scores_codex":[0.9981293,0.0003548766,0.0004349614,0.0004237424,0.0002943691,0.0003627127],"domain_scores_gemma":[0.9984631,0.0007844348,0.0002881487,0.00007654124,0.0002858779,0.0001019038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001404397,0.00005609365,0.9039993,0.000005020702,0.0001482532,0.00000659854,0.0001799856,0.003465833,0.09099686,0.00002191666,0.00003290694,0.001073206],"study_design_scores_gemma":[0.0002915892,0.00004202048,0.9942412,0.00001120252,0.00009254007,0.000001251057,0.0000852176,0.003603365,0.000593598,0.0003298293,0.000530323,0.0001778418],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979025,0.0004422964,0.0001436055,0.0009246251,0.00003384637,0.0002567682,0.0001362209,0.00003365972,0.0001264669],"genre_scores_gemma":[0.9969632,0.0003264048,0.001142189,0.0001356051,0.00005394894,0.0000318445,0.0005506843,0.000002760478,0.0007933625],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09040326,"threshold_uncertainty_score":0.9922501,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02099823328240643,"score_gpt":0.2340426399147481,"score_spread":0.2130444066323417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}