{"id":"W3111301571","doi":"10.1186/s12864-020-07321-3","title":"Genome-wide association analysis reveals genetic variations and candidate genes associated with salt tolerance related traits in Gossypium hirsutum","year":2021,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Research in Cotton Cultivation","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Shandong Academy of Agricultural Sciences; Natural Science Foundation of Jiangsu Province; Government of Jiangsu Province","keywords":"Biology; Candidate gene; Quantitative trait locus; Genome-wide association study; Genetics; Single-nucleotide polymorphism; Gossypium; Cultivar; Gene; Marker-assisted selection; Horticulture; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001933112,0.0002573883,0.0002467525,0.000768458,0.0002615759,0.0001931701,0.0001346116,0.0001502098,0.001477797],"category_scores_gemma":[0.0001736661,0.00009492241,0.0004067285,0.0009122968,0.0001396743,0.00006509989,0.0002368479,0.0001895879,0.0001191013],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001040316,"about_ca_system_score_gemma":0.0001583406,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002928306,"about_ca_topic_score_gemma":0.005653407,"domain_scores_codex":[0.9998853,0.00001277791,0.0000111691,0.00005266954,0.00001820152,0.00001974102],"domain_scores_gemma":[0.9998125,0.00004490008,0.00006920916,0.0000138732,0.0000178604,0.00004153446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009279503,0.00009423463,0.526399,0.0001386326,0.0004914466,0.001207765,0.0003930191,0.0003493105,0.4593946,0.0001112291,0.0003334503,0.01015927],"study_design_scores_gemma":[0.000008079251,0.00003909761,0.9981099,0.000002848406,0.0000737963,0.0001194232,0.0000586046,0.0003222574,0.001061441,0.00001684546,0.0001844701,0.000003197513],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993211,0.0001189852,0.0001481299,0.00001190551,0.000002613111,0.000002027309,0.0003010462,0.00000883864,0.00008523842],"genre_scores_gemma":[0.9988298,0.00005956423,0.0002570029,0.00001508441,0.000003666492,0.000005747653,0.0005141748,0.000004551002,0.0003104014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002928306,"threshold_uncertainty_score":0.005822539,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02099823328240643,"score_gpt":0.2340426399147481,"score_spread":0.2130444066323417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}