{"id":"W3111391225","doi":"10.1016/j.gpb.2018.07.010","title":"SeSaMe: Metagenome Sequence Classification of Arbuscular Mycorrhizal Fungi-Associated Microorganisms","year":2020,"lang":"en","type":"article","venue":"Genomics Proteomics & Bioinformatics","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metagenomics; Microorganism; Arbuscular mycorrhizal fungi; Biology; Arbuscular mycorrhizal; Symbiosis; Glomeromycota; Microbiology; Botany; Bacteria; Genetics; Gene; Horticulture; Inoculation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005442369,0.0006578417,0.0003978845,0.002074547,0.0003789261,0.0005795363,0.0003727695,0.0003852659,0.0009021221],"category_scores_gemma":[0.001512112,0.0001782463,0.0006594424,0.001448782,0.00009802627,0.0005418897,0.0005887367,0.0002844656,0.0005944096],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003166744,"about_ca_system_score_gemma":0.0005645434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00343635,"about_ca_topic_score_gemma":0.004979207,"domain_scores_codex":[0.9996825,0.00003979823,0.00004824716,0.000123544,0.00006013212,0.00004571147],"domain_scores_gemma":[0.9996984,0.0000567533,0.0000824418,0.00003089251,0.00008414811,0.0000474349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002803345,0.0004242166,0.138955,0.001589467,0.0005416271,0.0005936621,0.001067241,0.00324082,0.6856663,0.001088871,0.00577813,0.1582513],"study_design_scores_gemma":[0.0002549318,0.001657692,0.6608114,0.0003320184,0.0005379225,0.001872317,0.001104626,0.07767688,0.177706,0.001232136,0.07664416,0.000169801],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9141712,0.00104951,0.02634311,0.000106781,0.00003949893,0.0005186854,0.05338441,0.002296126,0.002090751],"genre_scores_gemma":[0.5564203,0.0008146313,0.1983053,0.0001631948,0.00002379946,0.0009449275,0.2409514,0.0006024395,0.001774089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00343635,"threshold_uncertainty_score":0.006832719,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03131482664675279,"score_gpt":0.2136976808858631,"score_spread":0.1823828542391103,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}