{"id":"W3111750192","doi":"10.1128/jb.00525-20","title":"The CckA-ChpT-CtrA Phosphorelay Controlling Rhodobacter capsulatus Gene Transfer Agent Production Is Bidirectional and Regulated by Cyclic di-GMP","year":2020,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Rhodobacter; Biology; Alphaproteobacteria; Plasmid; Bacterial protein; Function (biology); Bacteriology; Gene; Biochemistry; Cell biology; Mutant; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002068792,0.0003278517,0.000163365,0.0002669068,0.00015006,0.0003269213,0.0001695087,0.0001824602,0.0009666755],"category_scores_gemma":[0.0002247487,0.000174443,0.0001795008,0.0001123381,0.0003614114,0.0002627278,0.0002877764,0.0004016156,0.0004180199],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003390535,"about_ca_system_score_gemma":0.0003119567,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001062969,"about_ca_topic_score_gemma":0.001011162,"domain_scores_codex":[0.9998568,0.00002125468,0.000008518409,0.00003898449,0.00004028828,0.0000341965],"domain_scores_gemma":[0.9998017,0.00005663891,0.00004844546,0.00002457729,0.00002676627,0.00004192053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003540189,0.00000357573,0.00009948666,0.000006837341,5.772409e-7,0.00001848711,0.000006527509,0.00003006933,0.9990702,0.0001019576,0.000004524622,0.000622438],"study_design_scores_gemma":[0.000009210793,0.0001196508,0.003693802,0.00000387125,0.000004898799,0.0001776222,0.00004304504,0.001065242,0.9942063,0.00009716089,0.0005711421,0.000008030755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885937,0.0004720917,0.007890468,0.0001105121,0.00001943425,0.00002764751,0.0001480847,0.000218284,0.002519851],"genre_scores_gemma":[0.9961786,0.0001224386,0.002359671,0.00001982147,0.000003097131,0.00001169237,0.0001313844,0.00003252184,0.001140767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001062969,"threshold_uncertainty_score":0.00323385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009749302262549678,"score_gpt":0.2083474037293014,"score_spread":0.1985981014667517,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}