{"id":"W3112222532","doi":"10.1128/msphere.00562-20","title":"Nasal Tissue Extraction Is Essential for Characterization of the Murine Upper Respiratory Tract Microbiota","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Population Health Research Institute; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada","keywords":"Respiratory tract; Extraction (chemistry); Respiratory system; Medicine; Biology; Microbiology; Chemistry; Anatomy; Chromatography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004744211,0.00009045479,0.00009778881,0.000005877703,0.00006841926,0.00001044752,0.0001164832,0.0001291648,0.0001483508],"category_scores_gemma":[0.0000164656,0.00007453161,0.00007685857,0.00005499267,0.00003125548,0.000004299533,0.00003802989,0.00006404357,0.000008643574],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007070537,"about_ca_system_score_gemma":0.00007547277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006426045,"about_ca_topic_score_gemma":0.000007137476,"domain_scores_codex":[0.9994176,0.0000293147,0.0001764024,0.0002050635,0.00004520558,0.0001264338],"domain_scores_gemma":[0.9996105,0.000003314893,0.0001172717,0.0001686238,0.00005953274,0.00004068869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007926693,0.00004682782,0.001203383,0.00008490284,0.00001237761,2.008791e-7,0.0000659178,0.000001322641,0.9921035,0.000009878969,0.005423659,0.00096879],"study_design_scores_gemma":[0.0003569664,0.0001299338,0.02522457,0.000008573828,0.00001165967,0.000002531847,0.00001581379,0.000007048445,0.7409416,0.000001944544,0.233234,0.00006536799],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961337,0.0001409288,0.001339366,0.001622812,0.0002064028,0.0003217855,0.0001433084,0.000006803643,0.00008492076],"genre_scores_gemma":[0.9963613,0.0000265811,0.0001994628,0.002182371,0.00045658,0.000008829078,0.0001419665,0.00002011008,0.0006028248],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2511619,"threshold_uncertainty_score":0.3039311,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01299118713061353,"score_gpt":0.2743434510896914,"score_spread":0.2613522639590779,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}