{"id":"W3112329158","doi":"10.1093/gbe/evaa221","title":"Symbiotic and Nonsymbiotic Members of the Genus <i>Ensifer</i> (syn. <i>Sinorhizobium</i> ) Are Separated into Two Clades Based on Comparative Genomics and High-Throughput Phenotyping","year":2020,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Fondazione Cassa di Risparmio di Firenze; Ministero dell’Istruzione, dell’Università e della Ricerca; Natural Sciences and Engineering Research Council of Canada; Queen's University; Teagasc","keywords":"Biology; Clade; Genus; Symbiosis; Comparative genomics; Genomics; Evolutionary biology; Botany; Phylogenetics; Genetics; Genome; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001952689,0.0003332692,0.0003054701,0.0006751991,0.0004116985,0.0003662869,0.0001760315,0.0001791082,0.0008554017],"category_scores_gemma":[0.0002934254,0.0001284338,0.0002396366,0.0006433204,0.0002660255,0.0003605902,0.0007120533,0.0002504135,0.0001952641],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001951725,"about_ca_system_score_gemma":0.0002811369,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00196559,"about_ca_topic_score_gemma":0.004397089,"domain_scores_codex":[0.9997353,0.00002489468,0.00003283066,0.00008081645,0.0000596763,0.00006649365],"domain_scores_gemma":[0.9996819,0.00004934109,0.0001168437,0.00003524658,0.00004481628,0.00007187361],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004297296,0.00005835416,0.08833395,0.0001985659,0.00003801772,0.0001382933,0.0003304488,0.00008360873,0.8987548,0.0001822138,0.00007169393,0.01138026],"study_design_scores_gemma":[0.0000139838,0.00044384,0.9221253,0.00002929522,0.0001024895,0.000822634,0.0008185672,0.0005020734,0.07033046,0.0002138153,0.004580576,0.00001691014],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973929,0.000616617,0.0005659383,0.00001825111,0.000004795627,0.00001679938,0.0005019337,0.00002072014,0.0008621217],"genre_scores_gemma":[0.9952862,0.0003701648,0.001642349,0.00003639756,0.000006659395,0.00002395457,0.002025783,0.000009709825,0.0005989548],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00196559,"threshold_uncertainty_score":0.003908277,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01797021468513699,"score_gpt":0.2243649174331506,"score_spread":0.2063947027480136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}