{"id":"W3112329158","doi":"10.1093/gbe/evaa221","title":"Symbiotic and Nonsymbiotic Members of the Genus <i>Ensifer</i> (syn. <i>Sinorhizobium</i> ) Are Separated into Two Clades Based on Comparative Genomics and High-Throughput Phenotyping","year":2020,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Fondazione Cassa di Risparmio di Firenze; Ministero dell’Istruzione, dell’Università e della Ricerca; Natural Sciences and Engineering Research Council of Canada; Queen's University; Teagasc","keywords":"Biology; Clade; Genus; Symbiosis; Comparative genomics; Genomics; Evolutionary biology; Botany; Phylogenetics; Genetics; Genome; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001487705,0.0002207259,0.0003494918,0.00001440303,0.0003854552,0.00002644197,0.0001445251,0.000179571,0.0000143008],"category_scores_gemma":[0.00004138384,0.0001000457,0.0000534559,0.0002840061,0.0004918631,0.00006420508,0.0001277088,0.0001853238,0.00000613707],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006172544,"about_ca_system_score_gemma":0.00001962272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004230101,"about_ca_topic_score_gemma":0.0002179921,"domain_scores_codex":[0.9986882,0.0002465399,0.0002568759,0.0004671088,0.00007796736,0.0002632921],"domain_scores_gemma":[0.9993408,0.0002042977,0.000201161,0.00007976405,0.00005957909,0.0001144017],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001881894,0.00004083329,0.06463294,0.00003667267,0.0000570962,9.616867e-7,0.0005034777,0.00004706875,0.933339,0.0006311005,0.00004892169,0.0004737496],"study_design_scores_gemma":[0.001382003,0.00113394,0.9356176,0.00008782943,0.0002178992,0.00002177012,0.0009297057,0.00365784,0.05413667,0.001396825,0.0007517786,0.0006661552],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954312,0.001525855,0.00001134116,0.002438127,0.00009389075,0.0003005216,0.00008568398,0.00003809504,0.00007530918],"genre_scores_gemma":[0.9985464,0.0000380199,0.0001607727,0.001089733,0.000104898,0.000004825404,0.00004795209,0.000002254579,0.000005115447],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8792023,"threshold_uncertainty_score":0.4079746,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01797021468513699,"score_gpt":0.2243649174331506,"score_spread":0.2063947027480136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}