{"id":"W3112659104","doi":"10.1038/s41598-020-78752-x","title":"Early immune innate hallmarks and microbiome changes across the gut during Escherichia coli O157: H7 infection in cattle","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Fondo para la Investigación Científica y Tecnológica; Consejo Nacional de Investigaciones Científicas y Técnicas; Alberta Agriculture and Forestry; University of Calgary","keywords":"Microbiology; Innate immune system; Biology; Lamina propria; Escherichia coli; Immune system; NOD2; Intimin; Mucin; Microbiome; Immunology; Pattern recognition receptor; TLR4; Bacteria; Enterobacteriaceae; Epithelium; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002128246,0.0002854425,0.0003977709,0.0004929914,0.0003644506,0.0006222587,0.0001341411,0.0005650914,0.000778109],"category_scores_gemma":[0.0002202671,0.0001957449,0.000236198,0.0002727703,0.0003639662,0.0003434778,0.0002802481,0.0006377472,0.0001997405],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004165675,"about_ca_system_score_gemma":0.000302266,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002370865,"about_ca_topic_score_gemma":0.003003158,"domain_scores_codex":[0.9997224,0.00003294031,0.00001594704,0.0000703983,0.00005311688,0.0001050565],"domain_scores_gemma":[0.9998292,0.00001642488,0.00004833276,0.000005622067,0.00003616129,0.00006428797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001422319,0.0001628371,0.0504233,0.0002136678,0.00004150458,0.0004844478,0.0009860728,0.00008352633,0.9408941,0.00006694385,0.0001868382,0.005034377],"study_design_scores_gemma":[0.00002750644,0.001251714,0.9255846,0.00005585532,0.00009724587,0.0007974445,0.002484262,0.0004859531,0.06657577,0.0001524646,0.00245227,0.00003503533],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979191,0.001050437,0.0002250986,0.00003845273,0.00001307559,0.00001246536,0.0003342745,0.00000716317,0.000399919],"genre_scores_gemma":[0.997159,0.0007318983,0.000337338,0.0001103687,0.00001087798,0.00002788955,0.0005247131,0.000004690644,0.001093137],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002370865,"threshold_uncertainty_score":0.004714191,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01261514938548962,"score_gpt":0.2664131041202951,"score_spread":0.2537979547348055,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}