{"id":"W3112706733","doi":"10.1093/neuonc/noaa222.031","title":"ATRT-33. ENABLING RAPID CLASSIFICATION OF ATRT WITH NANOSTRING NCOUNTER PLATFORM","year":2020,"lang":"en","type":"article","venue":"Neuro-Oncology","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; Ontario Institute for Cancer Research; University of Toronto","funders":"","keywords":"Subtyping; DNA methylation; Transcriptome; Epigenetics; Computational biology; Workflow; Gene expression; Gene; Bioinformatics; Biology; Computer science; Database; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001954967,0.0008451718,0.0005724683,0.00168446,0.000465039,0.0008236525,0.0008047888,0.0008007845,0.006648044],"category_scores_gemma":[0.001828946,0.00067487,0.000580685,0.0006676175,0.0005308694,0.0005313488,0.0008944179,0.0008230923,0.003890742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005859344,"about_ca_system_score_gemma":0.0006870283,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001528937,"about_ca_topic_score_gemma":0.004067678,"domain_scores_codex":[0.9977351,0.0002242272,0.0001880894,0.0009210883,0.0007669991,0.0001644061],"domain_scores_gemma":[0.9992704,0.0002085802,0.0001341316,0.0001791626,0.0001530213,0.00005467294],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003322025,0.00007414076,0.01311052,0.0002765057,0.0001098019,0.0002158448,0.0001264959,0.002411672,0.9320815,0.001018595,0.006762595,0.04348018],"study_design_scores_gemma":[0.00002823793,0.000147225,0.02368407,0.00002799548,0.00005417226,0.0006021804,0.00003275133,0.04653546,0.9050475,0.0009124594,0.02287031,0.00005768554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.326376,0.001494945,0.5872862,0.0007392453,0.0003153688,0.001178254,0.03559909,0.03500694,0.01200398],"genre_scores_gemma":[0.3671103,0.0005929819,0.5765932,0.0007877594,0.00007566995,0.003512517,0.03191116,0.002393206,0.01702323],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.006648044,"threshold_uncertainty_score":0.02223986,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0325335385647089,"score_gpt":0.274933744672727,"score_spread":0.2424002061080181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}