{"id":"W3113721398","doi":"10.34067/kid.0006942020","title":"In Vivo Entombment of Bacteria and Fungi during Calcium Oxalate, Brushite, and Struvite Urolithiasis","year":2020,"lang":"en","type":"article","venue":"Kidney360","topic":"Kidney Stones and Urolithiasis Treatments","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"Mayo Clinic and Illinois Strategic Alliance for Technology-Based Healthcare; National Institute of Diabetes and Digestive and Kidney Diseases; Center for Individualized Medicine, Mayo Clinic; University of Illinois at Urbana-Champaign; National Aeronautics and Space Administration","keywords":"Brushite; Struvite; Biomineralization; Calcium oxalate; Proteobacteria; Chemistry; Actinobacteria; Firmicutes; Mineralogy; Biology; 16S ribosomal RNA; Calcium; Oxalate; Biochemistry; Astrobiology; Gene; Inorganic chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002842845,0.0002474137,0.0003555003,0.0006222892,0.0003492674,0.0005245926,0.0001375343,0.0003656901,0.0007945615],"category_scores_gemma":[0.0005225024,0.0002976005,0.0002302286,0.0003737771,0.0003842089,0.0003009547,0.0004371354,0.0003475545,0.0002150009],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000150182,"about_ca_system_score_gemma":0.000142199,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008426741,"about_ca_topic_score_gemma":0.001067761,"domain_scores_codex":[0.9997122,0.00006092402,0.00001947232,0.00007836166,0.00005774957,0.00007126844],"domain_scores_gemma":[0.9996501,0.00007212221,0.00008712535,0.00002786423,0.00006121241,0.0001015104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002982379,0.0001585584,0.1874387,0.00007457572,0.00005714588,0.0009595591,0.001139692,0.000220957,0.80009,0.00008237597,0.00006391441,0.006732028],"study_design_scores_gemma":[0.000024208,0.001562543,0.8734366,0.00001128969,0.00006441349,0.002039104,0.001507253,0.001145544,0.1192478,0.00009313248,0.0008502762,0.00001796769],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991475,0.0001440451,0.0003256814,0.000006375972,0.000001732677,0.00001112317,0.0001008262,0.00000407219,0.0002586248],"genre_scores_gemma":[0.9986539,0.0001298734,0.0005459223,0.00002270618,0.000004845493,0.00001851998,0.0002982974,0.000003909168,0.0003220743],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008426741,"threshold_uncertainty_score":0.002658069,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0185398520599059,"score_gpt":0.2617504235906926,"score_spread":0.2432105715307867,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}