{"id":"W3113721398","doi":"10.34067/kid.0006942020","title":"In Vivo Entombment of Bacteria and Fungi during Calcium Oxalate, Brushite, and Struvite Urolithiasis","year":2020,"lang":"en","type":"article","venue":"Kidney360","topic":"Kidney Stones and Urolithiasis Treatments","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital; University of British Columbia","funders":"Mayo Clinic and Illinois Strategic Alliance for Technology-Based Healthcare; National Institute of Diabetes and Digestive and Kidney Diseases; Center for Individualized Medicine, Mayo Clinic; University of Illinois at Urbana-Champaign; National Aeronautics and Space Administration","keywords":"Brushite; Struvite; Biomineralization; Calcium oxalate; Proteobacteria; Chemistry; Actinobacteria; Firmicutes; Mineralogy; Biology; 16S ribosomal RNA; Calcium; Oxalate; Biochemistry; Astrobiology; Gene; Inorganic chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007667368,0.000210851,0.0004594106,0.0001119202,0.00003509392,0.0000179322,0.0000505672,0.0001029128,0.0002525217],"category_scores_gemma":[0.00009147961,0.0001840488,0.00005794246,0.0002006987,0.00006822784,0.0001238448,0.0001017662,0.0001375864,0.000005937447],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004009747,"about_ca_system_score_gemma":0.00005876322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001527453,"about_ca_topic_score_gemma":0.000002451504,"domain_scores_codex":[0.99875,0.00003577677,0.0003529512,0.0003728673,0.0002034307,0.0002849526],"domain_scores_gemma":[0.9990169,0.00002746342,0.0000916523,0.0001891899,0.00003418106,0.0006405735],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006653861,0.0002058278,0.7716883,0.0006017861,0.0001664451,0.0001249544,0.002837241,9.598784e-7,0.2221727,0.00009111055,0.0008231353,0.0006221269],"study_design_scores_gemma":[0.005935675,0.0003766944,0.9249023,0.0001380936,0.000164675,0.00009443118,0.0001855402,0.0001218989,0.06194071,0.00003214252,0.005919379,0.0001884116],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933283,0.000588034,0.000003690996,0.004680661,0.00007750786,0.0003521901,0.00009541832,0.00002996442,0.0008442546],"genre_scores_gemma":[0.9967219,0.0002863289,0.0004595443,0.001854933,0.00008238153,0.00001479665,0.00001169104,0.0000276333,0.0005408535],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1602319,"threshold_uncertainty_score":0.7505292,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0185398520599059,"score_gpt":0.2617504235906926,"score_spread":0.2432105715307867,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}