{"id":"W3113961431","doi":"10.1002/cam4.3695","title":"Tumor infiltrating neutrophils and gland formation predict overall survival and molecular subgroups in pancreatic ductal adenocarcinoma","year":2020,"lang":"en","type":"article","venue":"Cancer Medicine","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Vancouver General Hospital; Pancreas Centre (Canada); University of British Columbia","funders":"Terry Fox Research Institute","keywords":"MUC1; Oncology; Adenocarcinoma; Infiltration (HVAC); Gene signature; Internal medicine; Pathology; Proportional hazards model; Biology; Survival analysis; Mucin; Stromal cell; Transcriptome; Medicine; Cancer research; Gene; Gene expression; Cancer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003049984,0.0001818794,0.0006842816,0.0001066611,0.0000552207,0.00001095274,0.00005793074,0.00007671542,0.0001204679],"category_scores_gemma":[0.0004089634,0.0001405134,0.00002207156,0.0002079098,0.000276387,0.0001311962,0.00005157511,0.0003291478,0.000002086615],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008569726,"about_ca_system_score_gemma":0.0001440076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004847333,"about_ca_topic_score_gemma":0.00005009254,"domain_scores_codex":[0.9985542,0.00009709493,0.0003934173,0.0003088209,0.0003287511,0.0003177324],"domain_scores_gemma":[0.9991757,0.0001598802,0.00009081222,0.000134059,0.00006747662,0.0003721065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005193917,0.0000211761,0.9760447,0.0006230538,0.00006354176,0.0005580326,0.002139056,0.000002529661,0.01887919,0.0002858596,0.000360486,0.0005030209],"study_design_scores_gemma":[0.007691036,0.001401217,0.9784619,0.0005584921,0.0002816347,0.0003213885,0.0009794286,0.009551643,0.0002726911,0.0001576741,0.0001837433,0.0001391889],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9743803,0.009210696,0.0002134176,0.01421495,0.0000626424,0.0006020261,0.000008924027,0.00003176617,0.001275275],"genre_scores_gemma":[0.9958605,0.001393871,0.000195202,0.001949069,0.0004556077,0.00006610642,0.00003044124,0.00001940066,0.0000297653],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02148023,"threshold_uncertainty_score":0.5729971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03427200118148665,"score_gpt":0.3102500288010701,"score_spread":0.2759780276195834,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}