{"id":"W3114036239","doi":"10.1016/j.rvsc.2020.12.010","title":"Computational genomics of Torque teno sus virus and Porcine circovirus in swine samples from Canada","year":2020,"lang":"en","type":"article","venue":"Research in Veterinary Science","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; Université de Montréal; Université Laval","funders":"","keywords":"Porcine circovirus; Torque teno virus; Virology; Biology; Circovirus; Genomics; Virus; Computational biology; Genome; Genetics; Polymerase chain reaction; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000574408,0.00006974605,0.0001434257,0.00005438775,0.0001998167,0.00002937378,0.0002949527,0.00002255645,0.00004185517],"category_scores_gemma":[0.0002414666,0.00003552705,0.00001091691,0.001445853,0.0005852145,0.0001397213,0.0003982177,0.0001581586,0.000002461248],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000161672,"about_ca_system_score_gemma":0.0002487082,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6118228,"about_ca_topic_score_gemma":0.1736902,"domain_scores_codex":[0.9986777,0.00008229775,0.0001912536,0.0003166197,0.0004324613,0.0002996231],"domain_scores_gemma":[0.999248,0.0004704199,0.00003169118,0.00003513555,0.000103168,0.0001115378],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001001441,0.00004472413,0.05765592,0.00001121183,0.00000236627,0.00006966558,0.0002173054,0.0003167587,0.931618,0.0001921773,0.0000592075,0.009712553],"study_design_scores_gemma":[0.0001004658,0.0006851368,0.9941618,0.00002296805,4.893523e-7,0.000005581997,0.0005497002,0.001683065,0.001013365,0.0003888065,0.001311047,0.00007758151],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977745,0.0003412241,0.00000238477,0.001400849,0.0000238806,0.0001374946,0.0001121657,0.000007816348,0.000199664],"genre_scores_gemma":[0.9994267,0.0001376291,0.0003013388,0.00007498827,0.00004331153,0.000005990561,0.000006310864,5.416691e-7,0.000003171642],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9365059,"threshold_uncertainty_score":0.8413878,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2090147883596223,"score_gpt":0.3441217295340055,"score_spread":0.1351069411743832,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}