{"id":"W3114036239","doi":"10.1016/j.rvsc.2020.12.010","title":"Computational genomics of Torque teno sus virus and Porcine circovirus in swine samples from Canada","year":2020,"lang":"en","type":"article","venue":"Research in Veterinary Science","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; Université de Montréal; Université Laval","funders":"","keywords":"Porcine circovirus; Torque teno virus; Virology; Biology; Circovirus; Genomics; Virus; Computational biology; Genome; Genetics; Polymerase chain reaction; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004025925,0.0003850049,0.0004525798,0.001189415,0.002154379,0.001159376,0.0008282338,0.0005874651,0.001585862],"category_scores_gemma":[0.001465215,0.0002839259,0.00109524,0.001951096,0.000602241,0.0002604781,0.0005575922,0.0005203345,0.0003548089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008705877,"about_ca_system_score_gemma":0.01154895,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9388688,"about_ca_topic_score_gemma":0.9665089,"domain_scores_codex":[0.9995857,0.00004217056,0.0000146889,0.0001184328,0.00008907785,0.0001499842],"domain_scores_gemma":[0.9994389,0.0001594339,0.00003587553,0.00004135499,0.000247242,0.00007720303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001659461,0.0004691718,0.7954872,0.0005061303,0.001092666,0.001416873,0.003078725,0.0888847,0.02715174,0.003945794,0.03426088,0.04204664],"study_design_scores_gemma":[0.0001520469,0.0001642884,0.8251641,0.00009049354,0.0003511637,0.0004413273,0.01007738,0.1277231,0.003826161,0.001548316,0.03036265,0.00009896889],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9831324,0.0003260054,0.0005458865,0.0003244545,0.00001387472,0.00002852023,0.01367666,0.0001122194,0.001840004],"genre_scores_gemma":[0.9336115,0.000284918,0.002926972,0.0002056533,0.00001090527,0.00003471505,0.06122195,0.0000856426,0.001617818],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06113118,"threshold_uncertainty_score":0.1229823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2090147883596223,"score_gpt":0.3441217295340055,"score_spread":0.1351069411743832,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}