{"id":"W3114860505","doi":"10.1101/2020.12.29.424777","title":"<i>ESR1</i> mutant breast cancers show elevated basal cytokeratins and immune activation","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"National Institutes of Health; Shear Family Foundation; National Cancer Institute; University of Pittsburgh; U.S. Department of Defense","keywords":"Biology; Estrogen receptor alpha; Cancer research; Estrogen receptor; Breast cancer; Cancer; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001200409,0.0001986382,0.0002125154,0.0002587062,0.0001412187,0.0003737411,0.00008954381,0.0001659666,0.001299851],"category_scores_gemma":[0.0001247898,0.0001029748,0.0002408341,0.000210136,0.0001599856,0.0001418129,0.0001705897,0.0003408623,0.0003710588],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001447824,"about_ca_system_score_gemma":0.00007899637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000244959,"about_ca_topic_score_gemma":0.0004670764,"domain_scores_codex":[0.999864,0.00001030798,0.00001147036,0.00004583769,0.00004560341,0.00002270838],"domain_scores_gemma":[0.9998708,0.0000198346,0.00004943958,0.00001850735,0.00001969797,0.00002167633],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006586868,0.000008603041,0.007662592,0.00003764426,0.00001171197,0.0000712711,0.00001815093,0.00006327368,0.9896713,0.00004521143,0.00007009271,0.002274299],"study_design_scores_gemma":[0.00001092286,0.0001737547,0.2622423,0.0000124622,0.00005132066,0.002296262,0.0001478642,0.001445042,0.727373,0.0002847935,0.005948188,0.00001405627],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946597,0.0008589,0.00223675,0.00005956122,0.00001504033,0.000008651823,0.001142251,0.0001234441,0.0008956953],"genre_scores_gemma":[0.9962667,0.0003180136,0.001273919,0.00005852348,0.000007978812,0.00001094288,0.001096799,0.00002363922,0.0009434512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001299851,"threshold_uncertainty_score":0.004348457,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01549989525663277,"score_gpt":0.2273636375091166,"score_spread":0.2118637422524839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}