{"id":"W3115701144","doi":"10.1136/thoraxjnl-2020-215866","title":"DNA methylation is associated with airflow obstruction in patients living with HIV","year":2020,"lang":"en","type":"article","venue":"Thorax","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Institute of Circulatory and Respiratory Health; National Institute of Allergy and Infectious Diseases; Western Canada Research Grid; National Heart, Lung, and Blood Institute; Compute Canada","keywords":"Medicine; DNA methylation; Methylation; Epigenetics; COPD; Internal medicine; Lung cancer; Ageing; Cardiology; Genetics; DNA; Biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001232165,0.0001206173,0.0001848602,0.0003745377,0.0002249736,0.0002558008,0.000144369,0.0002713907,0.001636463],"category_scores_gemma":[0.0007578246,0.0001044952,0.0001410297,0.0005190775,0.0001354376,0.0001699238,0.0002305672,0.0002625055,0.00008852111],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009798029,"about_ca_system_score_gemma":0.00008180262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001984539,"about_ca_topic_score_gemma":0.002232933,"domain_scores_codex":[0.9999064,0.00002139535,0.000009463893,0.00003225757,0.0000140765,0.00001647568],"domain_scores_gemma":[0.9996799,0.00007466754,0.0001567109,0.00001394474,0.00002765198,0.00004717899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001165564,0.000009228474,0.9938952,0.00002037034,0.00005289038,0.00008545429,0.00006308345,0.00004243604,0.002159142,0.00001334857,0.0000645404,0.003477639],"study_design_scores_gemma":[0.000002495837,0.00006408593,0.9989583,0.000007579287,0.00002465942,0.0003265381,0.00007956159,0.000146294,0.0002063301,0.00003509915,0.0001471093,0.000001884102],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985043,0.0007626287,0.00009821466,0.00005285435,0.000004722385,0.000004429396,0.0002963338,0.00000422336,0.0002722044],"genre_scores_gemma":[0.9995536,0.0001395963,0.00006476971,0.00001721029,0.000006807433,0.000002719585,0.0001262672,6.934971e-7,0.00008833815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001984539,"threshold_uncertainty_score":0.005474567,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01350720350017913,"score_gpt":0.2294115333874267,"score_spread":0.2159043298872476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}