{"id":"W3115701144","doi":"10.1136/thoraxjnl-2020-215866","title":"DNA methylation is associated with airflow obstruction in patients living with HIV","year":2020,"lang":"en","type":"article","venue":"Thorax","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Institute of Circulatory and Respiratory Health; National Institute of Allergy and Infectious Diseases; Western Canada Research Grid; National Heart, Lung, and Blood Institute; Compute Canada","keywords":"Medicine; DNA methylation; Methylation; Epigenetics; COPD; Internal medicine; Lung cancer; Ageing; Cardiology; Genetics; DNA; Biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005963242,0.000141718,0.0002310832,0.00007800831,0.00004959048,0.00001536704,0.000028151,0.00006279683,0.00007916661],"category_scores_gemma":[0.00009715316,0.0001041941,0.00002902054,0.000416187,0.00002188395,0.0001043063,0.00001263244,0.0001502358,0.00004536814],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001963907,"about_ca_system_score_gemma":0.00003755458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001477001,"about_ca_topic_score_gemma":0.00002872335,"domain_scores_codex":[0.9990762,0.00005255119,0.0001636872,0.0002516111,0.0002922465,0.0001637005],"domain_scores_gemma":[0.9995408,0.00004106747,0.00009734168,0.0001171509,0.00008048632,0.000123157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006033163,0.0003512149,0.9824861,0.00003367094,0.0001688303,0.00005018059,0.001585752,0.0000959801,0.002912043,0.0000104759,0.0001052982,0.01159716],"study_design_scores_gemma":[0.002748819,0.001337091,0.9905379,0.0002016694,0.0001099173,0.000008965505,0.0001007685,0.001204995,0.003489288,0.000007283404,0.0001252394,0.0001280096],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971399,0.00001264337,0.0002380088,0.001130163,0.00004026516,0.0003324852,0.000008211843,0.0001143133,0.0009839707],"genre_scores_gemma":[0.9989299,0.000003261125,0.0002856804,0.0004662013,0.00003383744,0.00001812246,0.00003758605,0.00002476248,0.0002006901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01146915,"threshold_uncertainty_score":0.4248911,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01350720350017913,"score_gpt":0.2294115333874267,"score_spread":0.2159043298872476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}