{"id":"W3116360520","doi":"10.3389/fgene.2020.600692","title":"Methods for Detecting Mycobacterial Mixed Strain Infections–A Systematic Review","year":2020,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick; Agriculture and Agri-Food Canada; Memorial University of Newfoundland","funders":"Leonard M. Miller School of Medicine; Dairy Farmers of Canada; University of Miami","keywords":"Tuberculosis; Biology; Mycobacterium tuberculosis; Transmission (telecommunications); Mycobacterium tuberculosis complex; Identification (biology); Disease; Microevolution; Computational biology; Medicine; Population; Pathology; Environmental health; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008878483,0.0001597401,0.0007700428,0.0001029119,0.00005280415,0.00003192214,0.0001256287,0.00009977065,0.00004099511],"category_scores_gemma":[0.005912086,0.0001438426,0.0001659293,0.0003685147,0.00003290951,0.00003650476,0.00004862927,0.0001906514,0.000007773926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008927145,"about_ca_system_score_gemma":0.0001233453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003373883,"about_ca_topic_score_gemma":0.000002561254,"domain_scores_codex":[0.9983265,0.000348534,0.0005398238,0.0002768501,0.0001663877,0.0003418541],"domain_scores_gemma":[0.998943,0.0002722786,0.0001176214,0.000267096,0.0001175463,0.0002824563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","study_design_scores_codex":[0.0003803369,0.0002442713,0.03026829,0.8615041,0.0004907165,0.00003100131,0.000559455,0.00001507442,0.02599615,0.00002456169,0.03900975,0.04147634],"study_design_scores_gemma":[0.03898918,0.02254689,0.04483838,0.4732211,0.01584532,0.0004501592,0.005107993,0.09846885,0.1628574,0.003528978,0.1283926,0.005753111],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.04546322,0.1009527,0.8333453,0.004524035,0.003262323,0.01170328,0.0001591187,0.0001956773,0.0003943572],"genre_scores_gemma":[0.0378154,0.01926035,0.9363272,0.003983956,0.0008917087,0.001436265,0.0001149382,0.00009087835,0.0000792768],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.3882829,"threshold_uncertainty_score":0.7077747,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0416806589974004,"score_gpt":0.3649819529312952,"score_spread":0.3233012939338948,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}