{"id":"W3116935562","doi":"10.21203/rs.3.rs-23603/v1","title":"Immune Transcripts of the Pacific Oyster, Crassostrea gigas Larvae that Change in Expression as a Result of Bacteria Challenge","year":2020,"lang":"en","type":"preprint","venue":"Research Square (Research Square)","topic":"Protein Hydrolysis and Bioactive Peptides","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Natural Science Foundation of China","keywords":"Biology; Crassostrea; Oyster; Broodstock; Transcriptome; KEGG; Vibrio alginolyticus; Immune system; Ostreidae; Pacific oyster; Gene; Innate immune system; Galectin; Microbiology; Gene expression; Vibrio; Shellfish; Genetics; Aquaculture; Fishery; Aquatic animal; Immunology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.006895579,0.0006516813,0.001148132,0.0008313475,0.0003051984,0.0001483305,0.002826982,0.001259541,0.0001568727],"category_scores_gemma":[0.001531019,0.0004899626,0.0008214169,0.001143201,0.001364065,0.00003483574,0.004651774,0.00340135,0.00002319311],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002175169,"about_ca_system_score_gemma":0.0009926135,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003634655,"about_ca_topic_score_gemma":0.0007472347,"domain_scores_codex":[0.986322,0.005498894,0.001151305,0.001819062,0.00355868,0.001649992],"domain_scores_gemma":[0.9944259,0.0003740798,0.0004672396,0.00265533,0.001677753,0.0003997044],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001961215,0.0009295932,0.003993378,0.002939035,0.0001865361,0.00004464604,0.003361384,0.00001135239,0.9818081,0.00006340631,0.0005907202,0.004110646],"study_design_scores_gemma":[0.001508118,0.002111119,0.02529549,0.004293427,0.00002003856,0.000004901349,0.002836394,0.0001257597,0.9551712,0.0009727735,0.007160268,0.0005005664],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9763299,0.01128012,0.00001972623,0.004238678,0.0002160818,0.004863391,0.001038714,0.00002233583,0.001991016],"genre_scores_gemma":[0.9872344,0.009792026,0.0001036567,0.00001810106,0.000446203,0.001418561,0.0005402684,0.0001175447,0.0003293071],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02663695,"threshold_uncertainty_score":0.9997552,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1471456322108615,"score_gpt":0.3938568672774119,"score_spread":0.2467112350665504,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}