{"id":"W3116935562","doi":"10.21203/rs.3.rs-23603/v1","title":"Immune Transcripts of the Pacific Oyster, Crassostrea gigas Larvae that Change in Expression as a Result of Bacteria Challenge","year":2020,"lang":"en","type":"preprint","venue":"Research Square (Research Square)","topic":"Protein Hydrolysis and Bioactive Peptides","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Natural Science Foundation of China","keywords":"Biology; Crassostrea; Oyster; Broodstock; Transcriptome; KEGG; Vibrio alginolyticus; Immune system; Ostreidae; Pacific oyster; Gene; Innate immune system; Galectin; Microbiology; Gene expression; Vibrio; Shellfish; Genetics; Aquaculture; Fishery; Aquatic animal; Immunology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006393179,0.0002807383,0.0002396307,0.0003036252,0.0002843384,0.0002700854,0.0001010938,0.0002149447,0.001081202],"category_scores_gemma":[0.0001334878,0.0001186791,0.0003155304,0.0004318406,0.0001840016,0.0001907026,0.0003037957,0.0003854452,0.0002121146],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002597559,"about_ca_system_score_gemma":0.0002578864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003483502,"about_ca_topic_score_gemma":0.004977086,"domain_scores_codex":[0.9999155,0.000002811264,0.000004747433,0.00003667012,0.00001776675,0.00002255753],"domain_scores_gemma":[0.9999157,0.00001028702,0.00002575159,0.000004028487,0.0000246855,0.00001957951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002094647,0.00001962208,0.01571737,0.0001775621,0.00001605679,0.0001554568,0.0001882669,0.00008951481,0.9801371,0.00003898276,0.0002188613,0.003031826],"study_design_scores_gemma":[0.00001367014,0.0003253272,0.9087476,0.00005481308,0.00008093195,0.0004377624,0.001144585,0.000841375,0.08387547,0.0001003579,0.004358651,0.00001940911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913802,0.001089787,0.0006513367,0.0000742013,0.00002581059,0.00001874949,0.005598269,0.00003926609,0.001122448],"genre_scores_gemma":[0.9864619,0.0008480673,0.001796699,0.0001799839,0.00001240979,0.00008071793,0.006475951,0.00002399389,0.00412021],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003483502,"threshold_uncertainty_score":0.006926477,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1471456322108615,"score_gpt":0.3938568672774119,"score_spread":0.2467112350665504,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}