{"id":"W3117141449","doi":"10.1111/vop.12854","title":"Current ocular microbiome investigations limit reproducibility and reliability: Critical review and opportunities","year":2020,"lang":"en","type":"review","venue":"Veterinary Ophthalmology","topic":"Ocular Infections and Treatments","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Microbiome; Workflow; Human Microbiome Project; Normalization (sociology); Gut microbiome; Computer science; Data science; Bioinformatics; Biology; Human microbiome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005687943,0.0004720406,0.002252868,0.0001595058,0.0001446278,0.00002356804,0.00008282526,0.0002617119,0.0001606092],"category_scores_gemma":[0.001283597,0.0003861658,0.000299343,0.0002157795,0.0007923303,0.00007875684,0.0003420671,0.0005032769,0.00003453167],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009931865,"about_ca_system_score_gemma":0.0003053164,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001031771,"about_ca_topic_score_gemma":3.104598e-8,"domain_scores_codex":[0.9967508,0.0006020775,0.0007369915,0.001540096,0.00009659684,0.0002734876],"domain_scores_gemma":[0.9977989,0.0002393919,0.0001473052,0.001331935,0.0001051048,0.0003773669],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001796637,0.0005914257,0.0005430453,0.3165785,0.0004325992,0.006240182,0.0000295413,5.632739e-9,0.000004474474,0.0002383722,0.0005085902,0.6748153],"study_design_scores_gemma":[0.0001547788,0.001462702,0.0001597971,0.01431717,0.0042897,0.09829059,0.000002849783,6.058622e-7,2.84254e-7,0.0001749048,0.8808999,0.0002467094],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003149703,0.9920564,0.00000222581,0.002541687,0.0002762443,0.001511571,0.0001669295,0.00005888352,0.0002363536],"genre_scores_gemma":[0.0002914194,0.9978882,0.0007430903,0.000190966,0.00009398613,0.0002906086,0.000356795,0.00004805195,0.00009685325],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8803913,"threshold_uncertainty_score":0.999859,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2733918102974932,"score_gpt":0.4300893553782096,"score_spread":0.1566975450807165,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}