{"id":"W3117500247","doi":"10.1101/2020.12.18.423565","title":"Long term survival of <i>Dehalococcoides mccartyi</i> strains in mixed cultures under electron acceptor and ammonium limitation","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Strategic Environmental Research and Development Program; University of Toronto; Ontario Genomics Institute; Government of Ontario; Ontario Genomics; Genome Canada; Government of Canada; U.S. Department of Defense","keywords":"Dehalococcoides; Ammonium chloride; Biology; Incubation; Strain (injury); Gene; Virulence; Microbiology; Horizontal gene transfer; Ammonium; Mutant; Operon; Vinyl chloride; Genetics; Chemistry; Biochemistry; Genome; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004372,0.0006493147,0.0008400693,0.0002555063,0.0004044605,0.000901946,0.0007255179,0.0006064834,0.000854809],"category_scores_gemma":[0.0006442828,0.0002074878,0.0004578677,0.0003312436,0.0002004209,0.0005283001,0.001004092,0.0007649168,0.0004942745],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006592341,"about_ca_system_score_gemma":0.0004053254,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006619135,"about_ca_topic_score_gemma":0.005488697,"domain_scores_codex":[0.9992368,0.00008086865,0.00008439861,0.0002634999,0.0001812551,0.0001530887],"domain_scores_gemma":[0.9990824,0.0001741273,0.0001763644,0.000148077,0.0002226737,0.0001962895],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002623491,0.0001355068,0.002643273,0.00005622494,0.00002789709,0.0001146291,0.0001046082,0.0001107318,0.9936971,0.0000385752,0.00009137043,0.002717703],"study_design_scores_gemma":[0.00003475671,0.002782278,0.06345911,0.00004117723,0.0001267022,0.0004405291,0.0006435862,0.002056871,0.9276117,0.00005821199,0.00269039,0.00005470398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978235,0.0004248584,0.0005195339,0.00005615567,0.00002071648,0.00003541416,0.0005043254,0.00002346632,0.0005920774],"genre_scores_gemma":[0.9942028,0.0002324414,0.001675729,0.00007042157,0.00001933546,0.00006399842,0.001588084,0.00003041577,0.002116798],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006619135,"threshold_uncertainty_score":0.01316118,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01656139515335762,"score_gpt":0.2285212615255875,"score_spread":0.2119598663722299,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}