{"id":"W3117516672","doi":"10.1186/s12864-020-07287-2","title":"Ion channel profiling of the Lymnaea stagnalis ganglia via transcriptome analysis","year":2021,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"The Scarborough Hospital; Canada Research Chairs; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Agence Nationale de la Recherche","keywords":"Lymnaea stagnalis; Biology; Transcriptome; De novo transcriptome assembly; Model organism; Genetics; Drosophila melanogaster; Genome; Caenorhabditis elegans; DNA microarray; Computational biology; Gene; Cell biology; Snail; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001772531,0.0001083164,0.000233226,0.0000964253,0.000170659,0.00001221926,0.0003987628,0.00009196794,0.00007807116],"category_scores_gemma":[0.00019461,0.00008202429,0.0002564211,0.0009326559,0.0002327838,0.00005152386,0.0001236529,0.0002190487,0.00001642716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002502918,"about_ca_system_score_gemma":0.000155683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001372492,"about_ca_topic_score_gemma":0.00004441404,"domain_scores_codex":[0.9985422,0.0004535102,0.0002293349,0.0003795913,0.000120914,0.0002744609],"domain_scores_gemma":[0.9991449,0.0001832115,0.00008936557,0.0004678961,0.00007127049,0.0000433517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004571525,0.00006229706,0.002699958,0.00002276261,0.00003219951,0.000004949949,0.0002084599,0.0012245,0.9952905,0.0003659436,0.00001906545,0.00002361309],"study_design_scores_gemma":[0.0001761424,0.00003754284,0.005247607,0.000002538391,0.0000722839,0.000007157269,0.00005636727,0.001940602,0.9911774,0.001141826,0.00005965916,0.00008089982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998158,0.00007276719,0.0007336795,0.0001457086,0.0002911212,0.0001512216,0.00006668308,0.0000171511,0.0003636883],"genre_scores_gemma":[0.9988316,0.0000478127,0.0001060192,0.0004947456,0.00005099423,0.00001058532,0.000009921004,0.00001145974,0.0004368807],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004113161,"threshold_uncertainty_score":0.3344854,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04925491002945059,"score_gpt":0.2823236719969867,"score_spread":0.2330687619675361,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}