{"id":"W3118089891","doi":"10.3390/microorganisms9010085","title":"Systematic Analysis of the Stress-Induced Genomic Instability of Type Three Secretion System in Aeromonas salmonicida subsp. salmonicida","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada","keywords":"Locus (genetics); Biology; Aeromonas salmonicida; Genetics; Prophage; Type three secretion system; Gene; Genomic island; Plasmid; genomic DNA; Gene cluster; Microbiology; Genome; Virulence; Bacteria; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003273517,0.0002627725,0.0009530741,0.0001657347,0.00008018678,0.00001250746,0.0006421309,0.000241714,0.0001886949],"category_scores_gemma":[0.00009497321,0.0001911814,0.0003334934,0.0014603,0.0001343143,0.00005585208,0.0002793477,0.0002362993,0.00007860183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002083293,"about_ca_system_score_gemma":0.00008706482,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005069763,"about_ca_topic_score_gemma":0.001029301,"domain_scores_codex":[0.9979412,0.0003680131,0.0009130201,0.0004165496,0.00007296407,0.0002882787],"domain_scores_gemma":[0.9985784,0.00007892656,0.0005521861,0.0006308578,0.000130221,0.00002942204],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001042051,0.0001148684,0.03165813,0.003300997,0.001466166,0.000002557925,0.001717558,0.00006711601,0.961015,0.0005047694,0.00003703497,0.00001156351],"study_design_scores_gemma":[0.001467473,0.0002030056,0.2290266,0.001159283,0.004306047,0.00000572384,0.004653556,0.0001714416,0.7585616,0.00001628252,0.0000396967,0.0003892954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964346,0.001803209,0.00007612678,0.0000970179,0.0002458209,0.0009802593,0.0001423649,0.00004740763,0.0001731558],"genre_scores_gemma":[0.9996399,0.000007936284,0.00001922029,0.00006143949,0.000009081609,0.00001060576,0.0001844151,0.00002304121,0.00004435859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2024535,"threshold_uncertainty_score":0.7796152,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01330546542448385,"score_gpt":0.2094351336849986,"score_spread":0.1961296682605147,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}