{"id":"W3118089891","doi":"10.3390/microorganisms9010085","title":"Systematic Analysis of the Stress-Induced Genomic Instability of Type Three Secretion System in Aeromonas salmonicida subsp. salmonicida","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada","keywords":"Locus (genetics); Biology; Aeromonas salmonicida; Genetics; Prophage; Type three secretion system; Gene; Genomic island; Plasmid; genomic DNA; Gene cluster; Microbiology; Genome; Virulence; Bacteria; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001590124,0.0003655536,0.0003564163,0.0005670105,0.0002255213,0.0002874331,0.0002161109,0.0002367106,0.0003012168],"category_scores_gemma":[0.0003378783,0.0001513699,0.000497113,0.0006643425,0.0002073039,0.0001194506,0.0003872247,0.0003470474,0.0001262506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003386994,"about_ca_system_score_gemma":0.0005539765,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006796834,"about_ca_topic_score_gemma":0.007777007,"domain_scores_codex":[0.9997506,0.00002184604,0.00002773232,0.00005851414,0.00007956215,0.00006170489],"domain_scores_gemma":[0.9996313,0.00004428811,0.000119244,0.00004184681,0.00009725453,0.00006603139],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009884383,0.00003829586,0.005470072,0.00003436137,0.00001914148,0.00006609062,0.00007460612,0.00003952398,0.992753,0.00001267381,0.00001455221,0.001378812],"study_design_scores_gemma":[0.00001911495,0.001602258,0.6585072,0.0000200977,0.0001907104,0.001231278,0.0006802276,0.000741125,0.3347865,0.00004708499,0.002145414,0.00002905723],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983066,0.0002266418,0.0005478393,0.00002088612,0.000005079594,0.00003151729,0.0005858753,0.00001179935,0.0002637771],"genre_scores_gemma":[0.9950717,0.0002797782,0.001491785,0.00004149412,0.000005471375,0.00003941708,0.002088903,0.00001495187,0.0009664571],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006796834,"threshold_uncertainty_score":0.01351458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01330546542448385,"score_gpt":0.2094351336849986,"score_spread":0.1961296682605147,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}