{"id":"W3118132858","doi":"10.3390/life10120362","title":"Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES","year":2020,"lang":"en","type":"article","venue":"Life","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Acadia University","funders":"Office of Science; Joint Genome Institute; Bundesanstalt für Materialforschung und -Prüfung; Canadian Institute for Advanced Research; U.S. Department of Energy","keywords":"Biology; Dothideomycetes; Extremophile; Extreme environment; Metagenomics; Polyphyly; Ecology; Evolutionary biology; Zoology; Ascomycota; Phylogenetic tree; Microorganism; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001311344,0.00006056075,0.000147976,0.000002970551,0.00003959886,0.000007841454,0.0004186423,0.00005871356,0.0001647601],"category_scores_gemma":[0.0003807727,0.0000142571,0.00007742451,0.0002737495,0.00006169567,0.00002623829,0.00007780209,0.0001059405,0.000007869918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001787574,"about_ca_system_score_gemma":0.00001220855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001062579,"about_ca_topic_score_gemma":0.0006787003,"domain_scores_codex":[0.9993376,0.0001295955,0.0001990661,0.0001061786,0.0001187159,0.0001089158],"domain_scores_gemma":[0.9995634,0.0002370255,0.00008367329,0.0000504634,0.00001876963,0.00004668532],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001278202,0.0002241526,0.7570294,0.0000310127,0.00003210405,0.000003019929,0.002538853,0.00001531962,0.2075431,0.001583039,0.02368329,0.007188865],"study_design_scores_gemma":[0.0001266292,0.0002130213,0.9850003,0.00000595361,0.000007462318,4.010488e-7,0.0008842629,0.00005361165,0.004594447,0.00008769446,0.008975983,0.00005021896],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.95072,0.0001994662,1.59537e-7,0.0445396,0.00006761215,0.0001036636,0.00001862869,0.000007486906,0.004343348],"genre_scores_gemma":[0.9955824,0.00001531239,0.000006953839,0.004083761,0.0002463966,0.000004113986,0.000002739776,3.410131e-7,0.0000580076],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2279709,"threshold_uncertainty_score":0.1804008,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02289056701683507,"score_gpt":0.1961096541373966,"score_spread":0.1732190871205616,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}