{"id":"W3118361991","doi":"10.3168/jds.2020-19626","title":"Phagomagnetic separation-quantitative PCR: A rapid, sensitive and specific surveillance tool for viable Mycobacterium avium ssp. paratuberculosis in bulk tank and individual cow milk samples","year":2021,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Queen's University; Invest Northern Ireland; Queen's University Belfast; Agrisearch","keywords":"Paratuberculosis; Bulk tank; Herd; Mycobacterium avium subsp. paratuberculosis; Biology; Food science; Mycobacterium; Veterinary medicine; Chromatography; Chemistry; Animal science; Bacteria; Medicine; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008052533,0.0003991324,0.0004610162,0.0006678248,0.0001837529,0.0004872843,0.0004190569,0.0004938135,0.0007712414],"category_scores_gemma":[0.001215133,0.0002987809,0.0002051933,0.0003556335,0.0004056208,0.0003129528,0.0004470354,0.000266231,0.0005595578],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002676846,"about_ca_system_score_gemma":0.0003651264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001400649,"about_ca_topic_score_gemma":0.002950623,"domain_scores_codex":[0.9989231,0.0001806592,0.00008365136,0.0003638129,0.000362407,0.00008647563],"domain_scores_gemma":[0.9993929,0.0001948015,0.0001682524,0.00004298211,0.000161473,0.00003965457],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002760503,0.00007625856,0.0364319,0.0001409529,0.00001252246,0.00006994156,0.0001731191,0.0001052341,0.9541045,0.00002514951,0.00009337738,0.008491004],"study_design_scores_gemma":[0.00006151822,0.001958289,0.3248202,0.00007373251,0.00008781258,0.002126947,0.0008270949,0.004829187,0.6612796,0.0001199588,0.003765134,0.00005050246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9815994,0.0003505894,0.01510831,0.00006314441,0.00001746656,0.0001554933,0.001450069,0.0001652245,0.001090233],"genre_scores_gemma":[0.9611949,0.0002874081,0.03343563,0.00009724266,0.00001636931,0.0003585068,0.002363355,0.00002815075,0.002218515],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001400649,"threshold_uncertainty_score":0.004258692,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04260604523320864,"score_gpt":0.3235536830521675,"score_spread":0.2809476378189589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}