{"id":"W3118392577","doi":"10.3390/pathogens10010041","title":"Extensive Phylogenetic Analysis of Piscine Orthoreovirus Genomic Sequences Shows the Robustness of Subgenotype Classification","year":2021,"lang":"en","type":"article","venue":"Pathogens","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Biology; Phylogenetic tree; GenBank; Genetics; Phylogenetics; Genome; Genotype; Clade; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004316591,0.0002961408,0.0003567697,0.002032369,0.0004660313,0.0004557378,0.0001590188,0.0002362299,0.001083147],"category_scores_gemma":[0.001053173,0.0001328009,0.0004190349,0.001854901,0.0002998652,0.0002966925,0.0004220981,0.0005165797,0.0004193654],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002331997,"about_ca_system_score_gemma":0.0002977815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001581468,"about_ca_topic_score_gemma":0.003268909,"domain_scores_codex":[0.9995568,0.00009201509,0.00003322332,0.0001509534,0.000094974,0.0000719052],"domain_scores_gemma":[0.9990735,0.0003420239,0.0002431176,0.00009651275,0.0001547575,0.0000901519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008096424,0.0001005488,0.2311728,0.0005812227,0.0002333039,0.0007738097,0.001919507,0.001367694,0.6720627,0.0003900218,0.0003332373,0.09025548],"study_design_scores_gemma":[0.00000604602,0.0003918523,0.971634,0.0000596186,0.0001030718,0.00104727,0.0006999794,0.001141186,0.01756644,0.0002439649,0.007082357,0.00002415034],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912599,0.001140661,0.003941032,0.00003554395,0.00001707321,0.00003924288,0.001445587,0.00003861881,0.002082334],"genre_scores_gemma":[0.9847381,0.001015258,0.005951387,0.00004564771,0.0000171498,0.00004542588,0.007425334,0.00002601742,0.0007356969],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002032369,"threshold_uncertainty_score":0.003623426,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05815310447712208,"score_gpt":0.327147509414022,"score_spread":0.2689944049368999,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}