{"id":"W3118498167","doi":"10.1093/jac/dkaa552","title":"<i>Neisseria gonorrhoeae</i>Sequence Typing for Antimicrobial Resistance (NG-STAR) clonal complexes are consistent with genomic phylogeny and provide simple nomenclature, rapid visualization and antimicrobial resistance (AMR) lineage predictions","year":2020,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Generalitat Valenciana","keywords":"Neisseria gonorrhoeae; Multilocus sequence typing; Biology; Typing; Antibiotic resistance; Genetics; Phylogenetics; Microbiology; Virology; Genotype; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001839977,0.0004189025,0.0004940759,0.00284137,0.000561406,0.001366381,0.0006313349,0.0003516474,0.00543079],"category_scores_gemma":[0.006306793,0.0001455382,0.0004447476,0.004618871,0.0005191119,0.0005523625,0.001138792,0.0004069057,0.001792225],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007946353,"about_ca_system_score_gemma":0.002161204,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02472565,"about_ca_topic_score_gemma":0.03674126,"domain_scores_codex":[0.9984029,0.0002458989,0.0002920275,0.0002711844,0.000596217,0.0001917777],"domain_scores_gemma":[0.9950617,0.0005736382,0.002233897,0.0005036222,0.001315118,0.0003120287],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009286018,0.00008563565,0.6384857,0.002723389,0.000285866,0.0008901494,0.002107463,0.001721677,0.05460226,0.005694526,0.08683653,0.2056383],"study_design_scores_gemma":[0.00006976045,0.0002077612,0.7545883,0.0008640928,0.0001589179,0.002224606,0.001120626,0.004237521,0.01304244,0.002345448,0.221051,0.00008957351],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6229403,0.003972107,0.04897607,0.001337701,0.0002361827,0.001621033,0.261666,0.003444467,0.05580623],"genre_scores_gemma":[0.6556603,0.001791252,0.1285626,0.0009769886,0.0001382715,0.0009536938,0.2054192,0.0006777655,0.005820089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02472565,"threshold_uncertainty_score":0.04916346,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02644018283061539,"score_gpt":0.279471795723976,"score_spread":0.2530316128933606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}