{"id":"W3118503920","doi":"10.1186/s40168-020-00950-6","title":"Comment on “Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection” by A.N. Zhang et al.","year":2021,"lang":"en","type":"letter","venue":"Microbiome","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Integron; Biology; Zhàng; Integrase; Phylogenetic tree; Genetics; Plasmid; Resistome; Genome; Bacterial genome size; Microbiome; Antibiotic resistance; Computational biology; Evolutionary biology; Bacteria; Gene; China","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003846558,0.0009491267,0.001321073,0.0007633279,0.003662525,0.002468055,0.00178835,0.04434393,0.005929768],"category_scores_gemma":[0.0244303,0.0008452104,0.001119392,0.0006170056,0.00270548,0.00294893,0.001200883,0.03589117,0.009823068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003697964,"about_ca_system_score_gemma":0.003248943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007620928,"about_ca_topic_score_gemma":0.008701985,"domain_scores_codex":[0.9972006,0.0006384237,0.0003948872,0.000500504,0.0009113633,0.000354161],"domain_scores_gemma":[0.9908367,0.005158278,0.0006460107,0.0002875279,0.002069423,0.00100208],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006215601,0.0000259748,0.0005061317,0.0000304059,0.000009322019,0.001126333,0.0001065032,0.00002655862,0.0001945775,0.0007562727,0.9940322,0.003123533],"study_design_scores_gemma":[0.0002158966,0.0001533909,0.003004831,0.0003305303,0.00006297029,0.004973537,0.0007963107,0.0007436399,0.001329863,0.01103735,0.9771931,0.0001585118],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.000406878,0.0005240534,0.0001317609,0.9774474,0.02015795,0.00001085126,0.0001104359,0.00006735531,0.001143244],"genre_scores_gemma":[0.002314496,0.0003911076,0.0001884565,0.9754328,0.01833527,0.0000260354,0.00003645273,0.0000351207,0.003240358],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.04434393,"threshold_uncertainty_score":0.02683073,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009891739252921685,"score_gpt":0.2388034370887641,"score_spread":0.2289116978358424,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}