{"id":"W3119188898","doi":"10.3390/min11010074","title":"Genomic Analysis of a Newly Isolated Acidithiobacillus ferridurans JAGS Strain Reveals Its Adaptation to Acid Mine Drainage","year":2021,"lang":"en","type":"article","venue":"Minerals","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Government of Ontario","keywords":"Acidithiobacillus; Biology; Genome; Gene; Genetics; GC-content; Comparative genomics; Strain (injury); Genome size; Genomics; Acidithiobacillus ferrooxidans; Chemistry; Bioleaching","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002594921,0.00018015,0.0004272463,0.0003298858,0.00003920533,0.00004043517,0.0001102474,0.00009574424,0.0006525138],"category_scores_gemma":[0.0001177971,0.0001800473,0.0001998611,0.001159882,0.000008120772,0.0001229798,0.00002183054,0.0001312479,0.00005122678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005980203,"about_ca_system_score_gemma":0.00001977567,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006085284,"about_ca_topic_score_gemma":0.0005492732,"domain_scores_codex":[0.9988098,0.00007810805,0.0004703811,0.0002389062,0.000172012,0.0002308401],"domain_scores_gemma":[0.9994133,0.00003843327,0.0000697021,0.0002449433,0.0001098283,0.0001237712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0000166223,0.00002096774,0.00002362754,0.00003890941,0.0004498718,0.00001475072,0.00103187,0.09284975,0.9013937,0.00007799116,0.0003090643,0.003772865],"study_design_scores_gemma":[0.001495665,0.0002163823,0.01971135,0.0001573172,0.001717112,0.00004239981,0.002661457,0.6878207,0.2731394,0.0001005798,0.01176022,0.001177436],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9723154,0.0006083548,0.02255091,0.0002426851,0.0001932356,0.0001516145,0.0002185989,0.0001117232,0.003607516],"genre_scores_gemma":[0.9920884,0.00003438201,0.003765598,0.0001923407,0.00006382684,0.000008244358,0.0002384384,0.00002335502,0.003585395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6282543,"threshold_uncertainty_score":0.7342117,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02543974998103235,"score_gpt":0.2484342660544543,"score_spread":0.2229945160734219,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}