{"id":"W3119188898","doi":"10.3390/min11010074","title":"Genomic Analysis of a Newly Isolated Acidithiobacillus ferridurans JAGS Strain Reveals Its Adaptation to Acid Mine Drainage","year":2021,"lang":"en","type":"article","venue":"Minerals","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Government of Ontario","keywords":"Acidithiobacillus; Biology; Genome; Gene; Genetics; GC-content; Comparative genomics; Strain (injury); Genome size; Genomics; Acidithiobacillus ferrooxidans; Chemistry; Bioleaching","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009091547,0.0004202828,0.0003172952,0.0005999025,0.0001896897,0.0002852606,0.0001679686,0.0002311782,0.0003264709],"category_scores_gemma":[0.0002350307,0.00009172226,0.0003742295,0.0007082361,0.0001410619,0.0001774515,0.0002547704,0.0002390178,0.0001287542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001075368,"about_ca_system_score_gemma":0.0001799286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002311356,"about_ca_topic_score_gemma":0.00211259,"domain_scores_codex":[0.9998959,0.000008962866,0.00001459599,0.00003038948,0.00002778613,0.00002244165],"domain_scores_gemma":[0.9998732,0.00002134598,0.00003366123,0.000009066945,0.00002935663,0.00003351104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001879834,0.00006984181,0.01428644,0.00009814927,0.00001489324,0.0004066456,0.0001537267,0.0001148951,0.9793555,0.00003466315,0.00004797878,0.005229229],"study_design_scores_gemma":[0.00004191098,0.001831581,0.7331859,0.00005152214,0.0002470741,0.006222407,0.002032327,0.001593503,0.2487658,0.0001296354,0.005845868,0.00005248204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974541,0.0002115552,0.0004774148,0.00003366187,0.000007160433,0.00001785778,0.001451465,0.00001706571,0.0003297588],"genre_scores_gemma":[0.991037,0.0003431855,0.002781627,0.00003158971,0.00001032462,0.00002301127,0.005209064,0.000009512514,0.0005546718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002311356,"threshold_uncertainty_score":0.004595816,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02543974998103235,"score_gpt":0.2484342660544543,"score_spread":0.2229945160734219,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}