{"id":"W3119357692","doi":"10.1038/s41467-020-20543-z","title":"Transcription shapes genome-wide histone acetylation patterns","year":2021,"lang":"en","type":"article","venue":"Nature Communications","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Acetylation; Nucleosome; Histone; Histone code; Histone Acetyltransferases; Chromatin immunoprecipitation; Histone H2A; Biology; Histone methylation; SAP30; Transcription coregulator; HDAC4; Histone methyltransferase; RNA polymerase II; Transcription (linguistics); Cell biology; Genetics; Chromatin remodeling; Promoter; Gene; Gene expression; DNA methylation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009472311,0.00009736699,0.00008437105,0.00002587699,0.0001742436,0.00002909843,0.0004223072,0.0002624738,0.00003211275],"category_scores_gemma":[0.00006284679,0.000110424,0.00008273829,0.00008969184,0.00004014121,0.000004288948,0.000170149,0.000280179,0.000009375569],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003483727,"about_ca_system_score_gemma":0.0000692086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005313929,"about_ca_topic_score_gemma":0.0008286638,"domain_scores_codex":[0.9993657,0.0000816621,0.0001644251,0.0001924068,0.00007741194,0.0001183877],"domain_scores_gemma":[0.9987551,0.00001793047,0.0000634289,0.0009552713,0.000165887,0.0000423572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000007596696,0.0001364072,0.006898132,0.00001550908,0.00005873173,9.748703e-7,0.000159387,0.0001633156,0.9885417,0.001722503,0.0009352007,0.001360494],"study_design_scores_gemma":[0.0008088031,0.00008297995,0.3457528,0.00002474401,0.00009142266,0.00004293505,0.0003904683,0.002850653,0.0487451,0.0005211122,0.6001459,0.0005431588],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.974249,0.01294382,0.005615395,0.00368436,0.0001426178,0.0001489765,0.0001042815,0.00002646653,0.003085107],"genre_scores_gemma":[0.9872702,0.002977908,0.005494152,0.0007511625,0.0000644995,0.00002198244,0.002796431,0.00001912565,0.0006045478],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9397966,"threshold_uncertainty_score":0.4502959,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01115692815755256,"score_gpt":0.266735920463447,"score_spread":0.2555789923058944,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}