{"id":"W3119571761","doi":"10.3390/proteomes9010001","title":"Secretome Analysis of Clavibacter nebraskensis Strains Treated with Natural Xylem Sap In Vitro Predicts Involvement of Glycosyl Hydrolases and Proteases in Bacterial Aggressiveness","year":2021,"lang":"en","type":"article","venue":"Proteomes","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Agriculture and Agri-Food Canada","funders":"","keywords":"Xylem; Cellulase; Chitinase; Proteases; Biology; Protease; Proteome; Microbiology; Strain (injury); Bacteria; Virulence; Glycosyl; Enzyme; Biochemistry; Botany; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001453294,0.0002042343,0.0006658109,0.0001041668,0.00003856225,0.00002632083,0.0001177314,0.0000803365,0.0001079336],"category_scores_gemma":[0.00009223864,0.00008653029,0.00008670711,0.001112627,0.0001251811,0.0001439716,0.0001150294,0.00009732327,2.689562e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003223689,"about_ca_system_score_gemma":0.00003174428,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005204429,"about_ca_topic_score_gemma":0.004569458,"domain_scores_codex":[0.9985702,0.0001438387,0.0004152152,0.0003800916,0.0002250105,0.0002656184],"domain_scores_gemma":[0.9993597,0.0001340328,0.0002636286,0.0000779465,0.0001105752,0.00005409011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003980883,0.0001447092,0.2282883,0.00004967974,0.0002375466,0.00004547531,0.000192646,0.000003808655,0.768456,0.000001936543,6.090813e-7,0.002181154],"study_design_scores_gemma":[0.0004270879,0.0001392723,0.6193467,0.0001418111,0.0001145086,0.000003262708,0.0002583088,0.00005424852,0.3793826,0.00000930953,0.000008003721,0.0001148982],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979421,0.0004046228,2.095846e-7,0.0001058576,0.00001877777,0.0005986062,0.0009033037,0.00001568312,0.00001082726],"genre_scores_gemma":[0.9990599,0.000121134,0.0001049729,0.00001429652,0.00002752773,0.0001184624,0.000541044,0.000001595424,0.00001111543],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3910584,"threshold_uncertainty_score":0.3528603,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01130032752607715,"score_gpt":0.2049566223462504,"score_spread":0.1936562948201732,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}