{"id":"W3119664706","doi":"10.1128/mbio.03079-20","title":"Biogeography of the Relationship between the Child Gut Microbiome and Innate Immune System","year":2021,"lang":"en","type":"article","venue":"mBio","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Prevention of Organ Failure; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada; Wellcome Trust; Wellcome","keywords":"Microbiome; Innate immune system; Gut microbiome; Biology; Immunity; Immune system; Immunology; Evolutionary biology; Ecology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003495365,0.0001606742,0.0002913251,0.0006960793,0.0002525387,0.0006852811,0.0001698844,0.0002246007,0.00197552],"category_scores_gemma":[0.000875227,0.0001746247,0.0001769779,0.0006795825,0.0004971492,0.0003677019,0.0006322914,0.0004337026,0.0002579252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002851417,"about_ca_system_score_gemma":0.0003399022,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003304492,"about_ca_topic_score_gemma":0.006257434,"domain_scores_codex":[0.9996473,0.000127213,0.00001499699,0.0001127044,0.00004007286,0.00005776675],"domain_scores_gemma":[0.9995072,0.0001060995,0.0002083068,0.00004625781,0.00004898797,0.00008317414],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004608932,0.00004015369,0.8491706,0.0002908582,0.0002668759,0.0004235115,0.0009825785,0.0007568054,0.1028123,0.003216614,0.0007331478,0.04084577],"study_design_scores_gemma":[0.000002507287,0.00006707625,0.9931671,0.00005037129,0.00004600525,0.0004162685,0.0004212426,0.0002932817,0.001772052,0.0007873349,0.002966255,0.00001055254],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9824387,0.007781221,0.003905043,0.0005051106,0.00002222717,0.00001189916,0.001132751,0.00003972633,0.0041633],"genre_scores_gemma":[0.9942206,0.002879915,0.00201285,0.0001077437,0.00001612466,0.00001518794,0.0003557641,0.00002352171,0.0003682584],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003304492,"threshold_uncertainty_score":0.006608725,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01050532462247014,"score_gpt":0.2303604239588276,"score_spread":0.2198550993363575,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}