{"id":"W3119790233","doi":"10.1128/mra.01279-20","title":"Complete Genome Sequence of Mycobacterium orygis Strain 51145","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Government of Canada; Bill and Melinda Gates Foundation","keywords":"Whole genome sequencing; Biology; Mycobacterium tuberculosis; Genetics; Genome; Strain (injury); Sequence (biology); Chromosome; Mycobacterium; Comparative genomics; Genomics; Computational biology; Gene; Tuberculosis; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003120315,0.0002228997,0.0005449565,0.000128156,0.00009016057,0.00002056517,0.0002160266,0.0001698353,0.001928292],"category_scores_gemma":[0.0001864741,0.0002049416,0.0001556856,0.0003312799,0.0003257982,0.0000537102,0.000228191,0.0002644812,0.0002230552],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001076211,"about_ca_system_score_gemma":0.0002804096,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003339891,"about_ca_topic_score_gemma":0.00001233474,"domain_scores_codex":[0.998044,0.0002036892,0.0004663872,0.0004974875,0.0001618301,0.0006265932],"domain_scores_gemma":[0.9986132,0.00009691292,0.0001441813,0.0005817997,0.0003509245,0.0002129247],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002335005,0.0002503541,0.03553636,0.0001675921,0.0002014457,0.0002630499,0.000187218,0.000001858061,0.9595817,0.00002267853,0.003239056,0.0003151321],"study_design_scores_gemma":[0.001756768,0.0005873691,0.0115111,0.0001292945,0.00007177478,0.0004698363,0.0002461412,0.000006163094,0.01333597,0.00001719111,0.9716609,0.0002074618],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9701533,0.0008715925,0.00005784284,0.001435629,0.0001684667,0.0004593589,0.02102379,0.00005266685,0.005777357],"genre_scores_gemma":[0.9031868,0.0006463276,0.002116638,0.006984939,0.0004361527,0.00009645858,0.07531056,0.00008369715,0.01113841],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9684219,"threshold_uncertainty_score":0.9989841,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04606964405083489,"score_gpt":0.2973089941995338,"score_spread":0.2512393501486989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}