{"id":"W3119792913","doi":"10.1101/2021.01.11.426108","title":"Comparative genomic analysis and characterization of <i>Staphylococcus</i> sp. AOAB, isolated from a notoriously invasive <i>Mnemiopsis leidyi</i> gut revealed multiple antibiotic resistance determinants","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Emergent BioSolutions (Canada)","funders":"Hebrew University of Jerusalem; Auburn University; Office of Experimental Program to Stimulate Competitive Research; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Microbiology; rpoB; 16S ribosomal RNA; Sequence analysis; Multilocus sequence typing; Genotype; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009400192,0.000281008,0.0002035707,0.0005531228,0.0001784045,0.0003327131,0.0001304945,0.0001890336,0.0005724503],"category_scores_gemma":[0.00029529,0.0001108484,0.0003426485,0.0004213786,0.0001303473,0.000115651,0.0002835004,0.0002600964,0.0003225675],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001232022,"about_ca_system_score_gemma":0.0001828536,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001837985,"about_ca_topic_score_gemma":0.001622413,"domain_scores_codex":[0.9998729,0.00001241909,0.00001098794,0.00004005264,0.0000353468,0.0000282469],"domain_scores_gemma":[0.9997641,0.00004799556,0.00006805799,0.00002052691,0.00006156853,0.00003764356],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007291154,0.000024872,0.004314477,0.00002741818,0.000007718335,0.0001206047,0.00009723184,0.00003412046,0.9932487,0.00002079716,0.00001538402,0.002015689],"study_design_scores_gemma":[0.00002565854,0.001279161,0.5808129,0.00004619625,0.0001515572,0.004070969,0.00150695,0.001517965,0.4043894,0.00009680782,0.006077388,0.00002500054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973431,0.000176418,0.000913624,0.00002956231,0.000008747442,0.00002274599,0.0008920166,0.00001121058,0.0006025311],"genre_scores_gemma":[0.9906239,0.0002600242,0.003646438,0.00006396142,0.00001624046,0.00004215434,0.00427714,0.00001705946,0.001053063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001837985,"threshold_uncertainty_score":0.00365454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01043743169728547,"score_gpt":0.2126454497446883,"score_spread":0.2022080180474028,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}