{"id":"W3120006882","doi":"10.1128/msystems.00974-20","title":"Nonadditive Transcriptomic Signatures of Genotype-by-Genotype Interactions during the Initiation of Plant-Rhizobium Symbiosis","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Fondazione Cassa di Risparmio di Firenze; Università degli Studi di Firenze; Ministero delle Politiche Agricole Alimentari e Forestali; Ministero dell’Istruzione, dell’Università e della Ricerca; Natural Sciences and Engineering Research Council of Canada; Queen's University; Government of Canada","keywords":"Biology; Holobiont; Symbiosis; Microbiome; Genotype; Crop; Rhizobium; Biotechnology; Transcriptome; Ecology; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001280265,0.0001177608,0.0002165322,0.00001545775,0.0001380572,0.00002383219,0.000201491,0.00008832602,0.0003443069],"category_scores_gemma":[0.00004921318,0.00004775463,0.000137632,0.0003248177,0.00004822797,0.0000862548,0.000031536,0.0001348601,0.00001401689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004177343,"about_ca_system_score_gemma":0.00001694379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006963232,"about_ca_topic_score_gemma":0.0009640178,"domain_scores_codex":[0.998909,0.0001732905,0.0003326548,0.000203355,0.0002141389,0.0001675649],"domain_scores_gemma":[0.9992347,0.0002767553,0.0002044244,0.00008514401,0.0001622813,0.00003671328],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003047312,0.00006217331,0.002599941,0.00003990254,0.00007047004,0.00000190784,0.0003963416,6.735201e-7,0.9953403,0.00009665898,0.001199706,0.0001614578],"study_design_scores_gemma":[0.0001374772,0.00005712689,0.03559633,0.00009774249,0.0000411584,0.00001468903,0.0008382387,0.00001067261,0.9610404,0.00002840365,0.002023723,0.0001140867],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964271,0.0007259696,0.000001822128,0.0003941618,0.0003592166,0.0001845157,0.001354992,0.00002807556,0.0005241337],"genre_scores_gemma":[0.9992875,0.00001522901,0.000009759015,0.00005985814,0.0001469529,0.00002056286,0.0002377814,0.000001981346,0.0002203049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03429995,"threshold_uncertainty_score":0.3769919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0103145158440578,"score_gpt":0.1995726489699386,"score_spread":0.1892581331258808,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}