{"id":"W3120850082","doi":"10.1128/mra.00734-20","title":"Complete Genome Sequences for 36 Canadian Salmonella enterica Serovar Typhimurium and I 1,4,[5],12:i:– Isolates from Clinical and Animal Sources","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Salmonella enterica; Serotype; Genome; Biology; Salmonella; Genetics; Microbiology; Computational biology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004564897,0.001443438,0.0008954693,0.004494072,0.001839007,0.001041882,0.001354623,0.0009587248,0.01014585],"category_scores_gemma":[0.00128561,0.0005831462,0.001239736,0.008390914,0.0005050414,0.0004897208,0.0008747785,0.00144289,0.004472493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004865688,"about_ca_system_score_gemma":0.01920384,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6585763,"about_ca_topic_score_gemma":0.7271773,"domain_scores_codex":[0.9993782,0.00002331609,0.00003524427,0.00008346485,0.0003157299,0.0001639831],"domain_scores_gemma":[0.9985669,0.00009704005,0.0002211067,0.00008237582,0.0007698314,0.0002627939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004206231,0.0004695252,0.02767396,0.005885893,0.0003412125,0.001996002,0.003626828,0.003025193,0.6925096,0.003045686,0.1205323,0.1366876],"study_design_scores_gemma":[0.0001856295,0.0004648588,0.3562137,0.0004605903,0.0005970506,0.001151327,0.001872281,0.001256277,0.03317005,0.0007516231,0.6035751,0.0003015056],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.1286031,0.005697365,0.008555193,0.001177787,0.0003411508,0.0005426008,0.8365734,0.0009314186,0.01757802],"genre_scores_gemma":[0.0564171,0.003150525,0.01853795,0.0002605355,0.00004970368,0.0001810742,0.9118329,0.000218263,0.009351987],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.3414237,"threshold_uncertainty_score":0.6868688,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04487714299462004,"score_gpt":0.2566450197230175,"score_spread":0.2117678767283975,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}