{"id":"W3120850082","doi":"10.1128/mra.00734-20","title":"Complete Genome Sequences for 36 Canadian Salmonella enterica Serovar Typhimurium and I 1,4,[5],12:i:– Isolates from Clinical and Animal Sources","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Salmonella enterica; Serotype; Genome; Biology; Salmonella; Genetics; Microbiology; Computational biology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004371564,0.0002820991,0.0005580211,0.0000242247,0.0004214381,0.00008115991,0.0002720309,0.0003335347,0.0002137547],"category_scores_gemma":[0.00008765814,0.0001470409,0.0001145397,0.0001156011,0.000505463,0.00005772147,0.000207381,0.0001895645,0.00002595993],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000278323,"about_ca_system_score_gemma":0.00003647381,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007001313,"about_ca_topic_score_gemma":0.01759516,"domain_scores_codex":[0.9975194,0.0003851753,0.0005195555,0.0008633547,0.00004143698,0.0006710222],"domain_scores_gemma":[0.9987578,0.0005805254,0.0001630026,0.0001136198,0.00009156676,0.0002934523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001371211,0.00003236593,0.2769617,0.000005350092,0.00009878781,0.00001296526,0.0001105469,3.755429e-7,0.720417,0.00001389357,0.0009605354,0.001249376],"study_design_scores_gemma":[0.0004675556,0.0006218951,0.2158472,0.00001875078,0.0000509194,0.00009281136,0.0007629655,0.00003014111,0.0001851699,0.000284986,0.7813109,0.0003266615],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881712,0.002783497,0.000004743593,0.003066925,0.0001452808,0.0002571983,0.005323621,0.00003435022,0.0002131721],"genre_scores_gemma":[0.9852091,0.0005209332,0.0004241313,0.005654132,0.0004919829,0.00002473263,0.00725615,0.000004798423,0.0004140207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7803504,"threshold_uncertainty_score":0.9996111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04487714299462004,"score_gpt":0.2566450197230175,"score_spread":0.2117678767283975,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}