{"id":"W3121303812","doi":"10.1371/journal.pgen.1008871","title":"Factors enforcing the species boundary between the human pathogens Cryptococcus neoformans and Cryptococcus deneoformans","year":2021,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"H2020 Marie Skłodowska-Curie Actions; National Institute of Allergy and Infectious Diseases; Horizon 2020; Instituto de Salud Carlos III; European Commission; European Regional Development Fund; Canadian Institute for Advanced Research; Horizon 2020 Framework Programme; Agència de Gestió d'Ajuts Universitaris i de Recerca; National Institutes of Health; National Institute of General Medical Sciences; Generalitat de Catalunya; Centres de Recerca de Catalunya","keywords":"Biology; Cryptococcus neoformans; Cryptococcus; MSH2; Genetics; Genetic recombination; Homologous recombination; DNA mismatch repair; Mitotic crossover; Meiosis; Recombination; DNA repair; DNA; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0001447393,0.0002337687,0.0003111968,0.00005056448,0.001525522,0.0001418501,0.0001204401,0.00008696452,0.0001397465],"category_scores_gemma":[0.00007208762,0.0001246154,0.0001322954,0.0002226606,0.0003423445,0.00005143729,0.0002349611,0.0003464911,0.0000170101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005327653,"about_ca_system_score_gemma":0.00009081289,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009432611,"about_ca_topic_score_gemma":0.0001033375,"domain_scores_codex":[0.9987196,0.00005298372,0.0003194024,0.0002211141,0.0002894074,0.0003974454],"domain_scores_gemma":[0.9989695,0.0002102009,0.00007788702,0.0004636198,0.0001762861,0.0001025011],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000006866273,0.00009923828,0.9605615,0.0001360178,0.0005670682,0.00002463983,0.006465618,0.00002989519,0.02811651,0.0008603768,0.001916045,0.001216236],"study_design_scores_gemma":[0.0005189502,0.0002881433,0.8369656,0.00007980421,0.000665098,0.00003136429,0.004795148,0.000197151,0.06070752,0.0004536462,0.09503049,0.0002671301],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867469,0.001759678,0.0001077805,0.0007533837,0.0001606624,0.0005384611,0.00004983158,0.0000556641,0.009827627],"genre_scores_gemma":[0.9973825,0.0005590231,0.0001050701,0.0003844574,0.0005162164,0.00004903385,0.00003975196,0.00002907624,0.0009348208],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1235959,"threshold_uncertainty_score":0.9997743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06746845350445208,"score_gpt":0.2867815175500081,"score_spread":0.219313064045556,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}