{"id":"W3121407008","doi":"10.1038/s41588-020-00763-1","title":"Large-scale association analyses identify host factors influencing human gut microbiome composition","year":2021,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1832,"is_retracted":false,"has_abstract":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Mount Sinai Hospital","funders":"National Institute on Minority Health and Health Disparities; National Center for Advancing Translational Sciences; Wellcome Trust; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; National Human Genome Research Institute; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; National Institute of Mental Health; Medical Research Council; Cancer Research UK; Novo Nordisk Fonden; National Institute of Neurological Disorders and Stroke; National Institute for Health and Care Research; Lundbeckfonden","keywords":"Biology; Microbiome; Host (biology); Gut microbiome; Scale (ratio); Computational biology; Evolutionary biology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002314272,0.0006141333,0.0006281643,0.001166969,0.0006988735,0.001297511,0.0004714255,0.0007883996,0.002358783],"category_scores_gemma":[0.005061235,0.0003677119,0.001242872,0.002053195,0.000679532,0.0004252973,0.001031445,0.001101025,0.0002769019],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001766796,"about_ca_system_score_gemma":0.0003970322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002007124,"about_ca_topic_score_gemma":0.004100844,"domain_scores_codex":[0.9976641,0.001180458,0.0001275348,0.0006151099,0.0002277047,0.0001851281],"domain_scores_gemma":[0.9954548,0.002357511,0.0009417304,0.0007166063,0.0001956324,0.0003336927],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001873839,0.0001286672,0.9420319,0.0001228209,0.004116805,0.0004501171,0.0002463421,0.0005262063,0.03398421,0.0004377605,0.0006988365,0.01538248],"study_design_scores_gemma":[0.00004760797,0.0001372653,0.9938871,0.00001788586,0.0009787498,0.0004708501,0.000158018,0.001272627,0.001530099,0.0006634351,0.0008172884,0.00001899839],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919408,0.002230898,0.003838378,0.0003297293,0.00005408962,0.00001021978,0.0009048667,0.00006021636,0.0006309354],"genre_scores_gemma":[0.9973029,0.0003250591,0.001554282,0.00009780056,0.00003234441,0.00001099471,0.0003463142,0.00003329245,0.0002971283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002358783,"threshold_uncertainty_score":0.01223916,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01344741732712578,"score_gpt":0.3366232818866221,"score_spread":0.3231758645594963,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}