{"id":"W3121439061","doi":"10.3390/genes12010111","title":"Defining the Rhizobium leguminosarum Species Complex","year":2021,"lang":"en","type":"article","venue":"Genes","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Science and Engineering Research Board; Biotechnology and Biological Sciences Research Council; Russian Science Foundation; Agence Nationale de la Recherche; Human Resource Development Group; Council of Scientific and Industrial Research, India; Seventh Framework Programme; Innovationsfonden; Department of Science and Technology, Ministry of Science and Technology, India; Rural and Environment Science and Analytical Services Division; University of Otago","keywords":"Biology; Genome; Rhizobium leguminosarum; Phylogenetics; Housekeeping gene; Evolutionary biology; Clade; Genetics; Sister group; Gene; Bacteria; Symbiosis; Rhizobiaceae","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001027551,0.00009511585,0.0001040821,0.00000317355,0.0003266926,0.000102142,0.0002391886,0.00004235284,0.001537268],"category_scores_gemma":[0.00004179293,0.00002864728,0.00009500403,0.0002424661,0.00006342439,0.00004488125,0.0001343935,0.00006426945,0.0003188699],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001102082,"about_ca_system_score_gemma":0.000009766404,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007424773,"about_ca_topic_score_gemma":0.0004782839,"domain_scores_codex":[0.9992111,0.00007188028,0.000118542,0.0002033535,0.0001578653,0.0002373028],"domain_scores_gemma":[0.9996054,0.0001735263,0.00003847717,0.00007907848,0.00006381931,0.00003972622],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000002985241,0.00002408071,0.03410845,0.000002172917,0.00001817997,0.00001046151,0.00006361424,2.210128e-7,0.9316167,0.007611195,0.009565353,0.01697661],"study_design_scores_gemma":[0.00005229256,0.00002902068,0.3203196,0.000005687448,0.00001444023,0.00003633267,0.000800235,0.000004572187,0.4186735,0.0006191425,0.2592892,0.0001559867],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9805765,0.002660072,6.820078e-7,0.01084587,0.0002253285,0.0000515651,0.00003849297,0.00007108962,0.005530372],"genre_scores_gemma":[0.9958852,0.00002635723,0.0002994227,0.001265516,0.0003583207,0.000006976871,0.0000698177,8.04949e-7,0.002087581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5129431,"threshold_uncertainty_score":0.9993755,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02714495142254774,"score_gpt":0.2200609411026207,"score_spread":0.1929159896800729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}