{"id":"W3121439061","doi":"10.3390/genes12010111","title":"Defining the Rhizobium leguminosarum Species Complex","year":2021,"lang":"en","type":"article","venue":"Genes","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Science and Engineering Research Board; Biotechnology and Biological Sciences Research Council; Russian Science Foundation; Agence Nationale de la Recherche; Human Resource Development Group; Council of Scientific and Industrial Research, India; Seventh Framework Programme; Innovationsfonden; Department of Science and Technology, Ministry of Science and Technology, India; Rural and Environment Science and Analytical Services Division; University of Otago","keywords":"Biology; Genome; Rhizobium leguminosarum; Phylogenetics; Housekeeping gene; Evolutionary biology; Clade; Genetics; Sister group; Gene; Bacteria; Symbiosis; Rhizobiaceae","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006148158,0.0004274207,0.0004219977,0.003401007,0.0009324556,0.001297461,0.0008114766,0.0006326037,0.0009151131],"category_scores_gemma":[0.001285691,0.0002268402,0.0003000643,0.00193253,0.0006838444,0.0008109466,0.001643886,0.0003764674,0.0004266331],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001462503,"about_ca_system_score_gemma":0.0009959314,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007162259,"about_ca_topic_score_gemma":0.007967499,"domain_scores_codex":[0.9992355,0.0001183863,0.00008450803,0.0002094133,0.0001757228,0.0001765299],"domain_scores_gemma":[0.998877,0.0001218513,0.0004068924,0.00009531122,0.0002664677,0.0002324541],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006153799,0.0002412817,0.2883251,0.000983122,0.0002008384,0.001977848,0.005064213,0.001822274,0.5879267,0.008656768,0.002985978,0.1012003],"study_design_scores_gemma":[0.00005352671,0.0005169091,0.8732086,0.0002835905,0.0001333813,0.003660387,0.003859536,0.00446387,0.01737956,0.003312834,0.09301102,0.0001167249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9824799,0.00382837,0.00491842,0.0002284994,0.00003829582,0.0002835651,0.001181056,0.00008373523,0.006958156],"genre_scores_gemma":[0.9791646,0.0008873105,0.01593419,0.0002297509,0.0000291759,0.00008560924,0.00297916,0.00003141112,0.0006586481],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007162259,"threshold_uncertainty_score":0.01424116,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02714495142254774,"score_gpt":0.2200609411026207,"score_spread":0.1929159896800729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}